Xenopus Anatomy Ontology
Abbreviation: XAO
Homepage http://www.xenbase.org/anatomy/xao.do?method=display
Countries that developed this resource United States
Created in 2008
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: XAO; Xenopus Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.17zapb; Last edited: Aug. 13, 2019, 3:59 p.m.; Last accessed: Sep 22 2019 5:36 a.m.
Record updated: July 8, 2019, 9:07 a.m. by The FAIRsharing Team.
| support email | General contact |
| help | http://www.xenbase.org/geneExpression/st ... |
Additional Information
| Contact | Erik Segerdell ORCID |
External Links
| Bioportal | http://bioportal.bioontology.org/ontologies/XAO |
| OBO | http://obofoundry.org/ontology/xao.html |
No XSD schemas defined
Conditions of Use
Applies to: Data useData Release
| Ontology release | No link recorded |
Data Access
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.
Segerdell E,Ponferrada VG,James-Zorn C,Burns KA,Fortriede JD,Dahdul WM,Vize PD,Zorn AM
J Biomed Semantics 2013
An ontology for Xenopus anatomy and development.
Segerdell E,Bowes JB,Pollet N,Vize PD
BMC Dev Biol 2008
View in BioPortal.
View in OBO Foundry.
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.
Xenopus laevis and tropicalis biology and genomics resource
Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. It includes gene expression patterns that incorporate image data from the literature, large scale screens and community submissions.
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
This record is not implemented by any policy.
Record Maintainer
This record is maintained by xenbase
Funds
National Institute of Child Health and Human Development (NICHD), Rockville, MD, USA (Government body)
National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
Maintains
Xenbase administrators (Consortium)
Grant Number(s)
P41 HD064556 (National Institute of Child Health and Human Development (NICHD), Rockville, MD, USA)
R01HD045776-03 (National Institutes of Health (NIH), Bethesda, MD, USA)
