databases > DOI:10.25504/FAIRsharing.1bnhyh
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ready Databases of Orthologous Promoters

Abbreviation:DoOP

General Information
DoOP is a database of eukaryotic promoter sequences (upstream regions), aiming to facilitate the recognition of regulatory sites conserved between species. Based on the Arabidopsis thaliana and Homo sapiens genome annotation, this resource is also a collection of the orthologous promoter sequences from Viridiplantae and Chordata species. The database can be used to find promoter clusters of different genes as well as positions of the conserved regions and transcription start sites, which can be viewed graphically.

Homepage http://doop.abc.hu/

Countries that developed this resource Hungary

Created in 2007

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How to cite this record FAIRsharing.org: DoOP; Databases of Orthologous Promoters; DOI: https://doi.org/10.25504/FAIRsharing.1bnhyh; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Sep 25 2021 5:26 a.m.


Record updated: Sept. 27, 2016, noon by The FAIRsharing Team.

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Publications

DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants.

Barta E., Sebestyén E., Pálfy TB., Tóth G., Ortutay CP., Patthy L.,
Nucleic Acids Res. 2005

View Paper (PubMed)

DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.

Sebestyen E,Nagy T,Suhai S,Barta E
BMC Bioinformatics 2009

View Paper (PubMed) View Publication

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Grant Number(s)

  • NK60352 (Hungarian Scientific Research Fund, Hungary)

  • NK72730 (Hungarian Scientific Research Fund, Hungary)