databases > DOI:10.25504/FAIRsharing.1ety1h

ready GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

General Information
Gene Signature DataBase (GeneSigDB) is a database of gene signatures (or gene sets) that have been extracted and manually curated from articles that are indexed by PubMed.

Homepage http://www.genesigdb.org

Countries that developed this resource United States

Created in 2009

Subjects 





How to cite this record FAIRsharing.org: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; GeneSigDB: a manually curated database and resource for analysis of gene expression signatures; DOI: https://doi.org/10.25504/FAIRsharing.1ety1h; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Nov 12 2019 8:57 a.m.


Record updated: Sept. 24, 2016, 5:56 p.m. by The FAIRsharing Team.

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Tools

    No tools defined


Access / Retrieve Data

Conditions of Use


Data Versioning

versioning by release No link recorded
access to historical files available http://www.genesigdb.org/genesigdb/downloadall.jsp
raw data, scripts and instructions provided to regenerate standardized files. No link recorded

Data Release

biannual release (as in twice a year) No link recorded

Data Curation

manual curation No link recorded

Data Access

file download(tab delimited) http://www.genesigdb.org/genesigdb/downloadall.jsp
browse http://www.genesigdb.org/genesigdb/browse.html
SQL database dump No link recorded
search http://www.genesigdb.org/genesigdb/advancedgenesearch.jsp

REST Web Services

RESTful API functions http://www.genesigdb.org/genesigdb/documentation.jsp#Programmatic_Acce ...


Publications

GeneSigDB--a curated database of gene expression signatures.

Culhane AC., Schwarzl T., Sultana R., Picard KC., Picard SC., Lu TH., Franklin KR., French SJ., Papenhausen G., Correll M., Quackenbush J.,
Nucleic Acids Res. 2010

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

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Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

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Funds

Maintains

Undefined

Grant Number(s)

  • 1P50HG004233 (ELIXIR Italy)

  • R01-CA098522 (ELIXIR Italy)