databases > DOI:10.25504/FAIRsharing.1ex4pm

ready MAPPER-2

Abbreviation:mapperdb

General Information
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcript, the region scanned extends from 10,000bp upstream of the transcript start to 50bp downstream of the coding sequence start. Therefore, the database contains putative binding sites in the gene promoter and in the initial introns and non-coding exons. Information displayed for each putative binding site includes the transcription factor name, its position (absolute on the chromosome, or relative to the gene), the score of the prediction, and the region of the gene the site belongs to. If the selected gene has homologs in any of the other two organisms, the program optionally displays the putative TFBSs in the homologs.

Homepage http://genome.ufl.edu/mapperdb

Countries that developed this resource United States

Created in 2005

Subjects 





How to cite this record FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Dec 03 2020 1:16 a.m.


Record updated: Sept. 8, 2016, 1:52 p.m. by The FAIRsharing Team.

Show edit history


Support

No support information provided.

Additional Information

Contact Help desk

Tools

    No tools defined


Access / Retrieve Data

Conditions of Use


Data Versioning

no versioning policy No link recorded
access to historical files available No link recorded

Data Release

ad-hoc release No link recorded

Data Curation

automated annotation No link recorded

Data Access

web interface No link recorded
file download(tab-delimited) No link recorded
programatic interface (DB-RPC] No link recorded



Publications

MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.

Marinescu VD., Kohane IS., Riva A.,
BMC Bioinformatics 2005

View Paper (PubMed)

The MAPPER database: a multi-genome catalog of putative transcription factor binding sites.

Marinescu VD., Kohane IS., Riva A.,
Nucleic Acids Res. 2005

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains