databases > DOI:10.25504/FAIRsharing.1ex4pm

ready MAPPER-2

Abbreviation:mapperdb

General Information
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcript, the region scanned extends from 10,000bp upstream of the transcript start to 50bp downstream of the coding sequence start. Therefore, the database contains putative binding sites in the gene promoter and in the initial introns and non-coding exons. Information displayed for each putative binding site includes the transcription factor name, its position (absolute on the chromosome, or relative to the gene), the score of the prediction, and the region of the gene the site belongs to. If the selected gene has homologs in any of the other two organisms, the program optionally displays the putative TFBSs in the homologs.

Homepage http://genome.ufl.edu/mapperdb

Countries that developed this resource United States

Created in 2005

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How to cite this record FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jun 18 2019 2:10 p.m.


Record updated: Sept. 8, 2016, 1:52 p.m. by The FAIRsharing Team.

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Publications

MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.

Marinescu VD., Kohane IS., Riva A.,
BMC Bioinformatics 2005

View Paper (PubMed)

The MAPPER database: a multi-genome catalog of putative transcription factor binding sites.

Marinescu VD., Kohane IS., Riva A.,
Nucleic Acids Res. 2005

View Paper (PubMed)

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