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TogoVar

General Information

TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them. TogoVar provides variant frequencies in the Japanese population that have been aggregated across research projects. Two available datasets, JGA-NGS and JGA-SNP, are obtained by aggregating individual genomic data that have been registered in the NBDC Human Database / Japanese Genotype-phenotype Archive (JGA). In addition, TogoVar integrates information related to genotypes or phenotypes that has been compiled independently in a variety of different databases and provides information for interpreting variants in a one-stop, easy-to-understand manner. TogoVar has been developed as a joint research project of National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST) and Database Center for Life Science (DBCLS), Joint Support-Center for Data Science Research, Research Organization of Information and Systems (ROIS) .

Homepage https://togovar.biosciencedbc.jp/

Countries that developed this resource Japan

Created in 2018

Taxonomic range

Homo sapiens

Knowledge Domains

Subjects

User-defined Tags

Japanese population

How to cite this record FAIRsharing.org: TogoVar; TogoVar; DOI: https://doi.org/10.25504/FAIRsharing.1ong6b; Last edited: July 16, 2019, 3:08 p.m.; Last accessed: Jul 30 2021 5:09 p.m.

This record is maintained by yatsuzuka ORCID

Record added: Oct. 19, 2018, 2:28 a.m.
Record updated: July 16, 2019, 1:27 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.1ong6b' by 'The FAIRsharing Team' at 13:27, 16 Jul 2019 (approved):

	'user_defined_tags' has been modified:
		Before:
			Japanese population
			genomic variation
		After:
			Japanese population
		Added:
		Removed:
			genomic variation

	'onto_domains' has been modified:
		Before:
			allele frequency
			next generation DNA sequencing
			variant
		After:
			SNP
			allele frequency
			next generation DNA sequencing
			variant
		Added:
			SNP
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.1ong6b' by 'The FAIRsharing Team' at 13:13, 05 Nov 2018 (approved):

	'domains' has been modified:
		Before:
			Allele frequency
			Japanese population
			Life Science
			genomic variation
		After:
			Allele frequency
			Japanese population
			Life Science
			Next generation DNA sequencing
			Sequence variant
			genomic variation
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			Next generation DNA sequencing
			Sequence variant
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	'licences' has been modified:
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			Open Data Commons Open Database License (ODC ODbL)|http://opendatacommons.org/licenses/odbl/1.0/|Data
		After:
			Open Data Commons Open Database License (ODC ODbL)|http://opendatacommons.org/licenses/odbl/1.0/|Data
			TogoVar Terms of Use and Attribution|https://togovar.biosciencedbc.jp/doc/terms|Data
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			TogoVar Terms of Use and Attribution|https://togovar.biosciencedbc.jp/doc/terms|Data
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	'supportLinks' has been modified:
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			FAQ|https://togovar.biosciencedbc.jp/doc/help?locale=en
			email|togovar@biosciencedbc.jp
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			FAQ|https://togovar.biosciencedbc.jp/doc/help?locale=en
			email|togovar@biosciencedbc.jp
			online documentation|https://togovar.biosciencedbc.jp/doc/about
			online documentation|https://togovar.biosciencedbc.jp/doc/datasets
		Added:
			online documentation|https://togovar.biosciencedbc.jp/doc/about
			online documentation|https://togovar.biosciencedbc.jp/doc/datasets
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	'dataProcesses' has been modified:
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Edits to 'https://fairsharing.org/FAIRsharing.1ong6b' by 'yatsuzuka' at 10:13, 23 Oct 2018 (approved):

	'domains' has been modified:
		Before:
			Life Science
		After:
			Allele frequency
			Japanese population
			Life Science
			NGS
			genomic variation
		Added:
			Allele frequency
			Japanese population
			NGS
			genomic variation
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	'standardsImplemented' has been modified:
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			Resource Description Framework
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			Resource Description Framework
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	'taxonomies' has been modified:
		Before:
			Japanese population
			allele frequency
			genomic variation
			integrated database
			variant annotation
		After:
			Homo sapiens
		Added:
			Homo sapiens
		Removed:
			Japanese population
			allele frequency
			genomic variation
			integrated database
			variant annotation

	'name' has been modified:
		Before: NBDC's integrated database of Japanese genomic variation
		After: TogoVar

	'related_databases' has been modified:
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			ClinVar
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			ClinVar
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Support

General

FAQ	Help
support email	Contact
online documentation	About TogoVar
online documentation	TogoVar Datasets Used

Additional Information

Contact

togovar@biosciencedbc.jp

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Data Download

https://togovar.biosciencedbc.jp/downloads

Publications

No publications available

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Resource Description Framework

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

ClinVar

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by yatsuzuka ORCID

Maintains

National Bioscience Database Center (NBDC), Tokyo, Japan (Research institute)

TogoVar

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