TogoVar
General Information
TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them.
TogoVar provides variant frequencies in the Japanese population that have been aggregated across research projects. Two available datasets, JGA-NGS and JGA-SNP, are obtained by aggregating individual genomic data that have been registered in the NBDC Human Database / Japanese Genotype-phenotype Archive (JGA). In addition, TogoVar integrates information related to genotypes or phenotypes that has been compiled independently in a variety of different databases and provides information for interpreting variants in a one-stop, easy-to-understand manner.
TogoVar has been developed as a joint research project of National Bioscience Database Center (NBDC), Japan Science and Technology Agency (JST) and Database Center for Life Science (DBCLS), Joint Support-Center for Data Science Research, Research Organization of Information and Systems (ROIS) .
How to cite this record
FAIRsharing.org: TogoVar; TogoVar; DOI: https://doi.org/10.25504/FAIRsharing.1ong6b;
Last edited: July 16, 2019, 3:08 p.m.; Last accessed: Apr 17 2021 2:47 p.m.
Record added: Oct. 19, 2018, 2:28 a.m.
Record updated:
July 16, 2019, 1:27 p.m. by The FAIRsharing Team.
Show edit history
Hide edit history
Edits to 'https://fairsharing.org/FAIRsharing.1ong6b' by 'The FAIRsharing Team' at 13:27, 16 Jul 2019 (approved):
'user_defined_tags' has been modified:
Before:
Japanese population
genomic variation
After:
Japanese population
Added:
Removed:
genomic variation
'onto_domains' has been modified:
Before:
allele frequency
next generation DNA sequencing
variant
After:
SNP
allele frequency
next generation DNA sequencing
variant
Added:
SNP
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.1ong6b' by 'The FAIRsharing Team' at 13:13, 05 Nov 2018 (approved):
'domains' has been modified:
Before:
Allele frequency
Japanese population
Life Science
genomic variation
After:
Allele frequency
Japanese population
Life Science
Next generation DNA sequencing
Sequence variant
genomic variation
Added:
Next generation DNA sequencing
Sequence variant
Removed:
'licences' has been modified:
Before:
Open Data Commons Open Database License (ODC ODbL)|http://opendatacommons.org/licenses/odbl/1.0/|Data
After:
Open Data Commons Open Database License (ODC ODbL)|http://opendatacommons.org/licenses/odbl/1.0/|Data
TogoVar Terms of Use and Attribution|https://togovar.biosciencedbc.jp/doc/terms|Data
Added:
TogoVar Terms of Use and Attribution|https://togovar.biosciencedbc.jp/doc/terms|Data
Removed:
'supportLinks' has been modified:
Before:
FAQ|https://togovar.biosciencedbc.jp/doc/help?locale=en
email|togovar@biosciencedbc.jp
After:
FAQ|https://togovar.biosciencedbc.jp/doc/help?locale=en
email|togovar@biosciencedbc.jp
online documentation|https://togovar.biosciencedbc.jp/doc/about
online documentation|https://togovar.biosciencedbc.jp/doc/datasets
Added:
online documentation|https://togovar.biosciencedbc.jp/doc/about
online documentation|https://togovar.biosciencedbc.jp/doc/datasets
Removed:
'dataProcesses' has been modified:
Before:
After:
Data Download
Added:
Data Download
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.1ong6b' by 'yatsuzuka' at 10:13, 23 Oct 2018 (approved):
'domains' has been modified:
Before:
Life Science
After:
Allele frequency
Japanese population
Life Science
NGS
genomic variation
Added:
Allele frequency
Japanese population
NGS
genomic variation
Removed:
'standardsImplemented' has been modified:
Before:
After:
Resource Description Framework
Added:
Resource Description Framework
Removed:
'taxonomies' has been modified:
Before:
Japanese population
allele frequency
genomic variation
integrated database
variant annotation
After:
Homo sapiens
Added:
Homo sapiens
Removed:
Japanese population
allele frequency
genomic variation
integrated database
variant annotation
'name' has been modified:
Before: NBDC's integrated database of Japanese genomic variation
After: TogoVar
'related_databases' has been modified:
Before:
After:
ClinVar
Added:
ClinVar
Removed:
Access / Retrieve Data
Conditions of Use
Data Access
Publications
No publications available
Related Standards
Reporting Guidelines
No guidelines defined
Terminology Artifacts
No semantic standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Implementing Policies
This record is not implemented by any policy.
We need your help!
Do you have 5-10 minutes to help FAIRsharing prioritize future enhancements?
Then please fill out this short questionnaire to
prioritise the improvements that are of greatest importance to you.
Your views will help us choose which enhancements to provide first. Thank you very much!
