standards > model/format > DOI:10.25504/FAIRsharing.20df5w


ready ENCODE peak information Format


General Information
The ENCODE peak information Format is used to provide called regions of signal enrichment based on pooled, normalized (interpreted) data.



How to cite this record FAIRsharing.org: ENCODE peak information Format; ENCODE peak information Format; DOI: https://doi.org/10.25504/FAIRsharing.20df5w; Last edited: Feb. 22, 2018, 1:59 p.m.; Last accessed: Sep 25 2018 9:45 a.m.


Record updated: Feb. 22, 2017, 2:25 p.m. by The FAIRsharing Team.

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Implementing Databases (3)
Encyclopedia of DNA Elements at UCSC
Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. UCSC coordinated data for the ENCODE Consortium from its inception in 2003 (Pilot phase) to the end of the first 5 year phase of whole-genome data production in 2012. All data produced by ENCODE investigators and the results of ENCODE analysis projects from this period are hosted in the UCSC Genome browser and database.

ENCODE Project
The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. ENCODE results from 2007 and later are available from this project. This covers data generated during the two production phases 2007-2012 and 2013-present.

Gene Transcription Regulation Database
Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

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