ENCODE peak information Format
Developed in United States
Scope and data types
How to cite this record FAIRsharing.org: ENCODE peak information Format; ENCODE peak information Format; DOI: https://doi.org/10.25504/FAIRsharing.20df5w; Last edited: Feb. 22, 2018, 1:59 p.m.; Last accessed: Nov 21 2018 7:48 p.m.
Record updated: Feb. 22, 2017, 2:25 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.20df5w' by 'The FAIRsharing Team' at 20:38, 18 Oct 2016 (approved): 'description' has been modified: Before: "ENCODE peak information Format" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://genome.ucsc.edu/FAQ/FAQformat.html#format13. This text was generated automatically. If you work on the project responsible for "ENCODE peak information Format" then please consider helping us by claiming this record and updating it appropriately. After: The ENCODE peak information Format is used to provide called regions of signal enrichment based on pooled, normalized (interpreted) data.
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Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. UCSC coordinated data for the ENCODE Consortium from its inception in 2003 (Pilot phase) to the end of the first 5 year phase of whole-genome data production in 2012. All data produced by ENCODE investigators and the results of ENCODE analysis projects from this period are hosted in the UCSC Genome browser and database.
The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active. ENCODE results from 2007 and later are available from this project. This covers data generated during the two production phases 2007-2012 and 2013-present.
Gene Transcription Regulation Database
Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.
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University of California, Santa Cruz (UCSC), California, USA (Charitable foundation)