How to cite this record
FAIRsharing.org: MouseMine; MouseMine @ MGI; DOI: https://doi.org/10.25504/FAIRsharing.22z3re;
Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 16 2021 11:27 p.m.
Publication for citation
MouseMine: a new data warehouse for MGI.
Motenko H,Neuhauser SB,O'Keefe M,Richardson JE; Mamm Genome ;
2015;
10.1007/s00335-015-9573-z;
Edits to 'https://fairsharing.org/FAIRsharing.22z3re' by 'The FAIRsharing Team' at 21:36, 12 Dec 2018 (approved):
'related_databases' has been modified:
Before:
IntAct molecular interaction database
Integrated resource of protein families, domains and functional sites
Reactome - a curated knowledgebase of biological pathways
Ensembl
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
Homologene
Biological General Repository for Interaction Datasets
Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins
UniProt Knowledgebase
FlyMine
MGI Mouse Gene Expression Database
Online Mendelian Inheritance in Man
RatMine
WormMine
YeastMine
ZebrafishMine
HumanMine
After:
IntAct molecular interaction database
Integrated resource of protein families, domains and functional sites
Reactome - a curated knowledgebase of biological pathways
Ensembl
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
Homologene
Biological General Repository for Interaction Datasets
Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins
UniProt Knowledgebase
FlyMine
MGI Mouse Gene Expression Database
e-Mouse Atlas
Online Mendelian Inheritance in Man
RatMine
WormMine
YeastMine
ZebrafishMine
HumanMine
Added:
e-Mouse Atlas
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.22z3re' by 'The FAIRsharing Team' at 21:35, 12 Dec 2018 (approved):
'standardsImplemented' has been modified:
Before:
Gene Ontology
Online Mendelian Inheritance in Man Ontology
Sequence Ontology
e-Mouse Atlas Project Anatomy Ontology
Mammalian Phenotype Ontology
After:
Gene Ontology
Online Mendelian Inheritance in Man Ontology
Sequence Ontology
e-Mouse Atlas Project Anatomy Ontology
Mammalian Phenotype Ontology
Disease Ontology
Added:
Disease Ontology
Removed:
'related_databases' has been modified:
Before:
FlyMine
RatMine
WormMine
YeastMine
ZebrafishMine
HumanMine
After:
IntAct molecular interaction database
Integrated resource of protein families, domains and functional sites
Reactome - a curated knowledgebase of biological pathways
Ensembl
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
Homologene
Biological General Repository for Interaction Datasets
Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins
UniProt Knowledgebase
FlyMine
MGI Mouse Gene Expression Database
Online Mendelian Inheritance in Man
RatMine
WormMine
YeastMine
ZebrafishMine
HumanMine
Added:
IntAct molecular interaction database
Integrated resource of protein families, domains and functional sites
Reactome - a curated knowledgebase of biological pathways
Ensembl
Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource
Homologene
Biological General Repository for Interaction Datasets
Protein ANalysis THrough Evolutionary Relationships: Classification of Genes and Proteins
UniProt Knowledgebase
MGI Mouse Gene Expression Database
Online Mendelian Inheritance in Man
Removed:
'supportLinks' has been modified:
Before:
online documentation|http://www.mousemine.org/mousemine/api.do
online documentation|http://www.mousemine.org/mousemine/dataCategories.do
tess training|https://tess.elixir-europe.org/materials/mousemine-at-mgi
After:
help|https://tess.elixir-europe.org/materials/mousemine-at-mgi
online documentation|http://www.mousemine.org/mousemine/api.do
online documentation|http://www.mousemine.org/mousemine/dataCategories.do
Added:
help|https://tess.elixir-europe.org/materials/mousemine-at-mgi
Removed:
tess training|https://tess.elixir-europe.org/materials/mousemine-at-mgi
Edits to 'https://fairsharing.org/FAIRsharing.22z3re' by 'The FAIRsharing Team' at 13:42, 14 Nov 2018 (approved):
'organizations' has been modified:
Before:
National Human Genome Research Institute|http://www.genome.gov/|Funds
Cambridge Systems Biology Centre, University of Cambridge, Cambridge, United Kingdom|http://www.sysbiol.cam.ac.uk|Maintains
Mouse Genome Informatics (MGI)|http://www.informatics.jax.org|Maintains
NHGRI NIH HHS||Funds
After:
National Human Genome Research Institute|http://www.genome.gov/|Funds
Cambridge Systems Biology Centre, University of Cambridge, Cambridge, United Kingdom|http://www.sysbiol.cam.ac.uk|Maintains
Mouse Genome Informatics (MGI)|http://www.informatics.jax.org|Maintains
Added:
Removed:
NHGRI NIH HHS||Funds
'related_databases' has been modified:
Before:
modMine
FlyMine
After:
FlyMine
Added:
Removed:
modMine
'supportLinks' has been modified:
Before:
FAQ|http://www.mousemine.org/blog/?page_id=52
After:
online documentation|http://www.mousemine.org/mousemine/api.do
online documentation|http://www.mousemine.org/mousemine/dataCategories.do
tess training|https://tess.elixir-europe.org/materials/mousemine-at-mgi
Added:
online documentation|http://www.mousemine.org/mousemine/api.do
online documentation|http://www.mousemine.org/mousemine/dataCategories.do
tess training|https://tess.elixir-europe.org/materials/mousemine-at-mgi
Removed:
FAQ|http://www.mousemine.org/blog/?page_id=52
'licences' has been modified:
Before:
Free||Undefined
After:
GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Data
Added:
GNU Lesser General Public License (LGPL) 2.1|https://www.gnu.org/licenses/lgpl-2.1.html|Data
Removed:
Free||Undefined
'dataProcesses' has been modified:
Before:
After:
Advanced Search (Query Builder)
Search Against A List
Search Via Pre-Defined Queries
Added:
Advanced Search (Query Builder)
Search Against A List
Search Via Pre-Defined Queries
Removed:
'miriam_id' has been modified:
Before: None
After:
'accessPoints' has been modified:
Before:
REST|http://www.mousemine.org/mousemine/service|REST
Other|http://iodocs.labs.intermine.org/mgi/docs#/|Interactive documentation
After:
REST|http://www.mousemine.org/mousemine/service|Web Service Client (Perl, Python, Ruby, Java)
Other|http://iodocs.labs.intermine.org/mgi/docs#/|Interactive documentation
Added:
REST|http://www.mousemine.org/mousemine/service|Web Service Client (Perl, Python, Ruby, Java)
Removed:
REST|http://www.mousemine.org/mousemine/service|REST
'tools' has been modified:
Before:
After:
Multiple Genome Viewer||http://proto.informatics.jax.org/prototypes/mgv/
Added:
Multiple Genome Viewer||http://proto.informatics.jax.org/prototypes/mgv/
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.22z3re' by 'The FAIRsharing Team' at 11:02, 30 Aug 2016 (approved):
'description' has been modified:
Before: Integrated mouse data. Populated by MGI, powered by InterMine.
After: A database of integrated mouse data from MGI, powered by InterMine. MouseMine is member of InterMOD, a consortium of model organism databases dedicated to making cross-species data analysis easier through ongoing coordination and collaborative system development. Publication List has changed: Previous values: New values: MouseMine: a new data warehouse for MGI. Support links have changed: Previous values: New values: http://www.mousemine.org/blog/?page_id=52 Organisations have changed: Previous values: Mouse Genome Informatics NHGRI NIH HHS New values: Mouse Genome Informatics National Human Genome Research Institute (NHGRI)|NIH Cambridge Systems Biology Centre|University of Cambridge|UK Mouse Genome Informatics