standards > model/format > DOI:10.25504/FAIRsharing.26dmba
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ready mz Markup Language

Abbreviation: mzML

General Information
mzML was formed to amalgamate two formats for encoding raw spectrometer data; mzData developed by the PSI, and, mzXML developed at the Seattle Proteome Center at the Institute for Systems Biology. The PSI, with full participation by the ISB, developed the new format by taking the best aspects of each of the precursors to form a single, less confusing, format.

This record replaces or incorporates the following deprecated resources:


Countries that developed this resource France , Germany , United Kingdom

Created in 2008

Taxonomic range


In the following recommendations:

How to cite this record mzML; mz Markup Language; DOI:; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 18 2022 7:51 a.m.

This record is maintained by HUPO PSI  (HUPOPSI)

Record updated: Aug. 7, 2018, 12:39 p.m. by The FAIRsharing Team.

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Conditions of Use


mzML--a community standard for mass spectrometry data.

Martens L, Chambers M, Sturm M, Kessner D, Levander F, Shofstahl J, Tang WH, Römpp A, Neumann S, Pizarro AD, Montecchi-Palazzi L, Tasman N, Coleman M, Reisinger F, Souda P, Hermjakob H, Binz PA, Deutsch EW.
Mol. Cell Proteomics 2011

View Paper (PubMed) View Publication

ProteomeXchange provides globally coordinated proteomics data submission and dissemination.

Vizcaino JA,Deutsch EW,Wang R,Csordas A,Reisinger F,Rios D,Dianes JA,Sun Z,Farrah T,Bandeira N,Binz PA,Xenarios I,Eisenacher M,Mayer G,Gatto L,Campos A,Chalkley RJ,Kraus HJ,Albar JP,Martinez-Bartolome S,Apweiler R,Omenn GS,Martens L,Jones AR,Hermjakob H
Nat Biotechnol 2014

View Paper (PubMed) View Publication

mzML--a community standard for mass spectrometry data.

Martens L,Chambers M,Sturm M,Kessner D,Levander F,Shofstahl J,Tang WH,Rompp A,Neumann S,Pizarro AD,Montecchi-Palazzi L,Tasman N,Coleman M,Reisinger F,Souda P,Hermjakob H,Binz PA,Deutsch EW
Mol Cell Proteomics 2010

View Paper (PubMed) View Publication

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