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Protein Data Bank in Europe

Abbreviation:PDBe

Recommended

General Information

The Protein Data Bank in Europe (PDBe) is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. It is a founding member of the worldwide Protein Data Bank which collects, organises and disseminates data on biological macromolecular structures.

Homepage http://www.pdbe.org

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 1996

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: PDBe; Protein Data Bank in Europe; DOI: https://doi.org/10.25504/FAIRsharing.26ek1v; Last edited: Feb. 24, 2021, 12:10 p.m.; Last accessed: Jan 26 2022 7:49 p.m.

This record is maintained by PDBe

Record updated: Feb. 24, 2021, 12:10 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'The FAIRsharing Team' at 20:45, 11 Feb 2020 (approved):

	'supportLinks' has been modified:
		Before:
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-quick-tour
			contact form|http://www.ebi.ac.uk/support/pdbe
			online documentation|http://www.ebi.ac.uk/pdbe/documentation
			online documentation|http://www.ebi.ac.uk/pdbe/deposition
			online documentation|https://www.ebi.ac.uk/pdbe/about/news
			training|https://www.ebi.ac.uk/pdbe/training
			twitter|@PDBeurope
		After:
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-quick-tour
			contact form|http://www.ebi.ac.uk/support/pdbe
			contact form|https://www.ebi.ac.uk/pdbe/about/contact
			online documentation|https://www.ebi.ac.uk/pdbe/about/news
			online documentation|https://www.ebi.ac.uk/pdbe/documentation
			training|https://www.ebi.ac.uk/pdbe/training
			twitter|@PDBeurope
		Added:
			contact form|https://www.ebi.ac.uk/pdbe/about/contact
			online documentation|https://www.ebi.ac.uk/pdbe/documentation
		Removed:
			online documentation|http://www.ebi.ac.uk/pdbe/documentation
			online documentation|http://www.ebi.ac.uk/pdbe/deposition

	'countries' has been modified:
		Before:
			European Union
			United Kingdom
		After:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Added:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
		Removed:
			European Union

	'onto_disciplines' has been modified:
		Before:
			Bioinformatics
			Life Science
		After:
			Bioinformatics
			Structural Biology
		Added:
			Structural Biology
		Removed:
			Life Science

	'dataProcesses' has been modified:
		Before:
			Download
			OneDep: Data Deposition Portal
			search by sequence
			PDBeFold- Search by structure
			Search
		After:
			Download
			Deposit
			search by sequence
			PDBeFold- Search by structure
		Added:
			Deposit
		Removed:
			OneDep: Data Deposition Portal
			Search

	'publications' has been modified:
		Before:
			PDBe: Protein Data Bank in Europe.|Velankar S., Alhroub Y., Best C., Caboche S., Conroy MJ., Dana JM., Fernandez Montecelo MA., van Ginkel G., Golovin A., Gore SP., Gutmanas A., Haslam P., Hendrickx PM., Heuson E., Hirshberg M., John M., Lagerstedt I., Mir S., Newman LE., Oldfield TJ., Patwardhan A., Rinaldi L., Sahni G., Sanz-Garca E., Sen S., Slowley R., Suarez-Uruena A., Swaminathan GJ., Symmons MF., Vranken WF., Wainwright M., Kleywegt GJ., |Nucleic Acids Res.|2012
			PDBe: improved accessibility of macromolecular structure data from PDB and EMDB.|Velankar S, van Ginkel G, Alhroub Y, Battle GM, Berrisford JM, Conroy MJ, Dana JM, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Lagerstedt I, Mir S, Fernandez Montecelo MA, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Sanz-Garca E, Sen S, Slowley RA, Wainwright ME, Deshpande MS, Iudin A, Sahni G, Salavert Torres J, Hirshberg M, Mak L, Nadzirin N, Armstrong DR, Clark AR, Smart OS, Korir PK, Kleywegt GJ.|Nucleic Acids Res.|2016
			The archiving and dissemination of biological structure data|    Helen M Berman, Stephen K Burley, Gerard J Kleywegt, John L Markley, Haruki Nakamura, Sameer Velankar|Current Opinion in Structural Biology|2016
			PDBe: towards reusable data delivery infrastructure at protein data bank in Europe.|Mir S,Alhroub Y,Anyango S,Armstrong DR,Berrisford JM,Clark AR,Conroy MJ,Dana JM,Deshpande M,Gupta D,Gutmanas A,Haslam P,Mak L,Mukhopadhyay A,Nadzirin N,Paysan-Lafosse T,Sehnal D,Sen S,Smart OS,Varadi M,Kleywegt GJ,Velankar S|Nucleic Acids Res|2017
		After:
			PDBe: Protein Data Bank in Europe.|Velankar S., Alhroub Y., Best C., Caboche S., Conroy MJ., Dana JM., Fernandez Montecelo MA., van Ginkel G., Golovin A., Gore SP., Gutmanas A., Haslam P., Hendrickx PM., Heuson E., Hirshberg M., John M., Lagerstedt I., Mir S., Newman LE., Oldfield TJ., Patwardhan A., Rinaldi L., Sahni G., Sanz-Garca E., Sen S., Slowley R., Suarez-Uruena A., Swaminathan GJ., Symmons MF., Vranken WF., Wainwright M., Kleywegt GJ., |Nucleic Acids Res.|2012
			PDBe: improved accessibility of macromolecular structure data from PDB and EMDB.|Velankar S, van Ginkel G, Alhroub Y, Battle GM, Berrisford JM, Conroy MJ, Dana JM, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Lagerstedt I, Mir S, Fernandez Montecelo MA, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Sanz-Garca E, Sen S, Slowley RA, Wainwright ME, Deshpande MS, Iudin A, Sahni G, Salavert Torres J, Hirshberg M, Mak L, Nadzirin N, Armstrong DR, Clark AR, Smart OS, Korir PK, Kleywegt GJ.|Nucleic Acids Res.|2016
			The archiving and dissemination of biological structure data|    Helen M Berman, Stephen K Burley, Gerard J Kleywegt, John L Markley, Haruki Nakamura, Sameer Velankar|Current Opinion in Structural Biology|2016
			PDBe: towards reusable data delivery infrastructure at protein data bank in Europe.|Mir S,Alhroub Y,Anyango S,Armstrong DR,Berrisford JM,Clark AR,Conroy MJ,Dana JM,Deshpande M,Gupta D,Gutmanas A,Haslam P,Mak L,Mukhopadhyay A,Nadzirin N,Paysan-Lafosse T,Sehnal D,Sen S,Smart OS,Varadi M,Kleywegt GJ,Velankar S|Nucleic Acids Res|2017
			PDBe: improved findability of macromolecular structure data in the PDB.|Armstrong DR,Berrisford JM,Conroy MJ,Gutmanas A,Anyango S,Choudhary P,Clark AR,Dana JM,Deshpande M,Dunlop R,Gane P,Gaborova R,Gupta D,Haslam P,Koca J,Mak L,Mir S,Mukhopadhyay A,Nadzirin N,Nair S,Paysan-Lafosse T,Pravda L,Sehnal D,Salih O,Smart O,Tolchard J,Varadi M,Svobodova-Varekova R,Zaki H,Kleywegt GJ,Velankar S|Nucleic Acids Res|2019
		Added:
			PDBe: improved findability of macromolecular structure data in the PDB.|Armstrong DR,Berrisford JM,Conroy MJ,Gutmanas A,Anyango S,Choudhary P,Clark AR,Dana JM,Deshpande M,Dunlop R,Gane P,Gaborova R,Gupta D,Haslam P,Koca J,Mak L,Mir S,Mukhopadhyay A,Nadzirin N,Nair S,Paysan-Lafosse T,Pravda L,Sehnal D,Salih O,Smart O,Tolchard J,Varadi M,Svobodova-Varekova R,Zaki H,Kleywegt GJ,Velankar S|Nucleic Acids Res|2019
		Removed:

	'accessPoints' has been modified:
		Before:
			REST|http://www.ebi.ac.uk/pdbe/api/doc/|REST calls based on PDB entry data
		After:
			REST|https://www.ebi.ac.uk/pdbe/pdbe-rest-api|REST calls based on PDB entry data
		Added:
			REST|https://www.ebi.ac.uk/pdbe/pdbe-rest-api|REST calls based on PDB entry data
		Removed:
			REST|http://www.ebi.ac.uk/pdbe/api/doc/|REST calls based on PDB entry data

	'tools' has been modified:
		Before:
			EMDB||http://www.ebi.ac.uk/pdbe/emdb
			PDBePISA||http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
			wwPDB Validation Service||http://validate.wwpdb.org
			Full PDBe Tools List||https://www.ebi.ac.uk/pdbe/services
		After:
			EMDB||http://www.ebi.ac.uk/pdbe/emdb
			wwPDB Validation Service||http://validate.wwpdb.org
			Full PDBe Tools List||https://www.ebi.ac.uk/pdbe/services
		Added:
		Removed:
			PDBePISA||http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'The FAIRsharing Team' at 13:13, 09 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			West-Life|http://about.west-life.eu/update/network/west-life/west-life|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Central European Institute of Technology|https://www.ceitec.eu/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
			European Union (EU)|http://europa.eu/index_en.htm|Funds
			Medical Research Council (MRC), London, UK|http://www.emouseatlas.org/emap/home.html|Funds
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
		After:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			National Science Foundation (NSF), USA|https://www.nsf.gov/|Funds
			European Union (EU)|http://europa.eu/index_en.htm|Funds
			Medical Research Council (MRC), London, UK|http://www.emouseatlas.org/emap/home.html|Funds
			National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
			National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA|http://www.nigms.nih.gov|Funds
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			West-Life|http://about.west-life.eu/update/network/west-life/west-life|Funds
			Central European Institute of Technology|https://www.ceitec.eu/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

	'supportLinks' has been modified:
		Before:
			contact form|http://www.ebi.ac.uk/support/pdbe
			online documentation|http://www.ebi.ac.uk/pdbe/documentation
			tess training|https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar
			tess training|https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank
			tess training|https://tess.elixir-europe.org/materials/pdbe-quick-tour
			tess training|https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures
			tess training|https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry
			training|http://www.ebi.ac.uk/pdbe/training
			twitter|@PDBeurope
		After:
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-quick-tour
			contact form|http://www.ebi.ac.uk/support/pdbe
			online documentation|http://www.ebi.ac.uk/pdbe/documentation
			online documentation|http://www.ebi.ac.uk/pdbe/deposition
			online documentation|https://www.ebi.ac.uk/pdbe/about/news
			training|https://www.ebi.ac.uk/pdbe/training
			twitter|@PDBeurope
		Added:
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank
			TeSS training|https://tess.elixir-europe.org/materials/pdbe-quick-tour
			online documentation|http://www.ebi.ac.uk/pdbe/deposition
			online documentation|https://www.ebi.ac.uk/pdbe/about/news
			training|https://www.ebi.ac.uk/pdbe/training
		Removed:
			tess training|https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar
			tess training|https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank
			tess training|https://tess.elixir-europe.org/materials/pdbe-quick-tour
			tess training|https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures
			tess training|https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry
			training|http://www.ebi.ac.uk/pdbe/training

	'description' has been modified:
		Before: The Protein Data Bank in Europe is a founding member of the worldwide Protein Data Bank which collects, organises and disseminates data on biological macromolecular structures.
		After: The Protein Data Bank in Europe (PDBe) is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. It is a founding member of the worldwide Protein Data Bank which collects, organises and disseminates data on biological macromolecular structures.

	'licences' has been modified:
		Before:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
		After:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			wwPDB Charter|https://www.wwpdb.org/about/agreement|Data
			PDBe Data Access Statement|https://www.ebi.ac.uk/pdbe/about/access|Data
		Added:
			wwPDB Charter|https://www.wwpdb.org/about/agreement|Data
			PDBe Data Access Statement|https://www.ebi.ac.uk/pdbe/about/access|Data
		Removed:

	'dataProcesses' has been modified:
		Before:
			Download
			Manual curation
			OneDep: Data Deposition Portal
			search by sequence
			PDBeFold- Search by structure
			Search
		After:
			Download
			OneDep: Data Deposition Portal
			search by sequence
			PDBeFold- Search by structure
			Search
		Added:
		Removed:
			Manual curation

	'contact' has been modified:
		Before: None
		After: PDBe Helpdesk

	'miriam_id' has been modified:
		Before: 
		After: MIR:00100037

	'publications' has been modified:
		Before:
			PDBe: Protein Data Bank in Europe.|Velankar S., Alhroub Y., Best C., Caboche S., Conroy MJ., Dana JM., Fernandez Montecelo MA., van Ginkel G., Golovin A., Gore SP., Gutmanas A., Haslam P., Hendrickx PM., Heuson E., Hirshberg M., John M., Lagerstedt I., Mir S., Newman LE., Oldfield TJ., Patwardhan A., Rinaldi L., Sahni G., Sanz-Garca E., Sen S., Slowley R., Suarez-Uruena A., Swaminathan GJ., Symmons MF., Vranken WF., Wainwright M., Kleywegt GJ., |Nucleic Acids Res.|2012
			PDBe: improved accessibility of macromolecular structure data from PDB and EMDB.|Velankar S, van Ginkel G, Alhroub Y, Battle GM, Berrisford JM, Conroy MJ, Dana JM, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Lagerstedt I, Mir S, Fernandez Montecelo MA, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Sanz-Garca E, Sen S, Slowley RA, Wainwright ME, Deshpande MS, Iudin A, Sahni G, Salavert Torres J, Hirshberg M, Mak L, Nadzirin N, Armstrong DR, Clark AR, Smart OS, Korir PK, Kleywegt GJ.|Nucleic Acids Res.|2016
			The archiving and dissemination of biological structure data|    Helen M Berman, Stephen K Burley, Gerard J Kleywegt, John L Markley, Haruki Nakamura, Sameer Velankar|Current Opinion in Structural Biology|2016
		After:
			PDBe: Protein Data Bank in Europe.|Velankar S., Alhroub Y., Best C., Caboche S., Conroy MJ., Dana JM., Fernandez Montecelo MA., van Ginkel G., Golovin A., Gore SP., Gutmanas A., Haslam P., Hendrickx PM., Heuson E., Hirshberg M., John M., Lagerstedt I., Mir S., Newman LE., Oldfield TJ., Patwardhan A., Rinaldi L., Sahni G., Sanz-Garca E., Sen S., Slowley R., Suarez-Uruena A., Swaminathan GJ., Symmons MF., Vranken WF., Wainwright M., Kleywegt GJ., |Nucleic Acids Res.|2012
			PDBe: improved accessibility of macromolecular structure data from PDB and EMDB.|Velankar S, van Ginkel G, Alhroub Y, Battle GM, Berrisford JM, Conroy MJ, Dana JM, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Lagerstedt I, Mir S, Fernandez Montecelo MA, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Sanz-Garca E, Sen S, Slowley RA, Wainwright ME, Deshpande MS, Iudin A, Sahni G, Salavert Torres J, Hirshberg M, Mak L, Nadzirin N, Armstrong DR, Clark AR, Smart OS, Korir PK, Kleywegt GJ.|Nucleic Acids Res.|2016
			The archiving and dissemination of biological structure data|    Helen M Berman, Stephen K Burley, Gerard J Kleywegt, John L Markley, Haruki Nakamura, Sameer Velankar|Current Opinion in Structural Biology|2016
			PDBe: towards reusable data delivery infrastructure at protein data bank in Europe.|Mir S,Alhroub Y,Anyango S,Armstrong DR,Berrisford JM,Clark AR,Conroy MJ,Dana JM,Deshpande M,Gupta D,Gutmanas A,Haslam P,Mak L,Mukhopadhyay A,Nadzirin N,Paysan-Lafosse T,Sehnal D,Sen S,Smart OS,Varadi M,Kleywegt GJ,Velankar S|Nucleic Acids Res|2017
		Added:
			PDBe: towards reusable data delivery infrastructure at protein data bank in Europe.|Mir S,Alhroub Y,Anyango S,Armstrong DR,Berrisford JM,Clark AR,Conroy MJ,Dana JM,Deshpande M,Gupta D,Gutmanas A,Haslam P,Mak L,Mukhopadhyay A,Nadzirin N,Paysan-Lafosse T,Sehnal D,Sen S,Smart OS,Varadi M,Kleywegt GJ,Velankar S|Nucleic Acids Res|2017
		Removed:

	'tools' has been modified:
		Before:
			EMDB||http://www.ebi.ac.uk/pdbe/emdb
			PDBePISA||http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
			wwPDB Validation Service||http://validate.wwpdb.org
		After:
			EMDB||http://www.ebi.ac.uk/pdbe/emdb
			PDBePISA||http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
			wwPDB Validation Service||http://validate.wwpdb.org
			Full PDBe Tools List||https://www.ebi.ac.uk/pdbe/services
		Added:
			Full PDBe Tools List||https://www.ebi.ac.uk/pdbe/services
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'The FAIRsharing Team' at 14:01, 07 Aug 2018 (approved):

	'supportLinks' has been modified:
		Before:
			contact form|http://www.ebi.ac.uk/support/pdbe
			online documentation|http://www.ebi.ac.uk/pdbe/documentation
			training|http://www.ebi.ac.uk/pdbe/training
			twitter|@PDBeurope
		After:
			contact form|http://www.ebi.ac.uk/support/pdbe
			online documentation|http://www.ebi.ac.uk/pdbe/documentation
			tess training|https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar
			tess training|https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank
			tess training|https://tess.elixir-europe.org/materials/pdbe-quick-tour
			tess training|https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures
			tess training|https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry
			training|http://www.ebi.ac.uk/pdbe/training
			twitter|@PDBeurope
		Added:
			tess training|https://tess.elixir-europe.org/materials/pdbe-an-introduction-to-search-and-entry-pages-webinar
			tess training|https://tess.elixir-europe.org/materials/pdbe-searching-the-protein-data-bank
			tess training|https://tess.elixir-europe.org/materials/pdbe-quick-tour
			tess training|https://tess.elixir-europe.org/materials/pdbe-searching-for-biological-macromolecular-structures
			tess training|https://tess.elixir-europe.org/materials/pdbe-exploring-a-protein-data-bank-pdb-entry
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'The FAIRsharing Team' at 09:58, 07 Aug 2018 (approved):

	'organizations' has been modified:
		Before:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			West-Life|http://about.west-life.eu/update/network/west-life/west-life|Funds
			European Union (EU)|http://ec.europa.eu/chafea/|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
			Central European Institute of Technology|https://www.ceitec.eu/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			Medical Research Council (MRC), London, United Kingdom|http://www.mrc.ac.uk|Funds
		After:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			West-Life|http://about.west-life.eu/update/network/west-life/west-life|Funds
			European Union (EU)|http://ec.europa.eu/chafea/|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
			Medical Research Council (MRC), London, United Kingdom|http://www.mrc.ac.uk|Funds
			Central European Institute of Technology|https://www.ceitec.eu/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			US National Institute of General Medical Sciences, (NIGMS)|http://www.nigms.nih.gov|Funds
			US National Science Foundation (NSF)|http://www.nsf.gov/|Funds
		Added:
			US National Institute of General Medical Sciences, (NIGMS)|http://www.nigms.nih.gov|Funds
			US National Science Foundation (NSF)|http://www.nsf.gov/|Funds
		Removed:

	'grants' has been modified:
		Before:
			088944
			104948
			226073
			284209
			BB/E007511/1
			BB/G022577/1
			BB/J007471/1
			BB/K016970/1
			BB/M011674/1
			BB/M013146/1
			GM079429
			MR/L007835/1
			R01GM079429-01A1
		After:
			088944
			104948
			1RO1 GM079429-01A1
			226073
			284209
			675858
			BB/E007511/1
			BB/G022577/1
			BB/J007471/1
			BB/K016970/1
			BB/K020013/1
			BB/M011674/1
			BB/M011674/1
			BB/M013146/1
			BB/M020347/1
			BB/M020428/1
			DBI-1338415
			GM079429
			MR/L007835/1
			R01GM079429-01A1
		Added:
			1RO1 GM079429-01A1
			675858
			BB/K020013/1
			BB/M020347/1
			BB/M020428/1
			DBI-1338415
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'The FAIRsharing Team' at 09:48, 07 Aug 2018 (approved):

	'organizations' has been modified:
		Before:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			West-Life|http://about.west-life.eu/update/network/west-life/west-life|Funds
			European Union (EU)|http://ec.europa.eu/chafea/|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
			Central European Institute of Technology|https://www.ceitec.eu/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
		After:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			West-Life|http://about.west-life.eu/update/network/west-life/west-life|Funds
			European Union (EU)|http://ec.europa.eu/chafea/|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
			Central European Institute of Technology|https://www.ceitec.eu/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			Medical Research Council (MRC), London, United Kingdom|http://www.mrc.ac.uk|Funds
		Added:
			Medical Research Council (MRC), London, United Kingdom|http://www.mrc.ac.uk|Funds
		Removed:

	'grants' has been modified:
		Before:
			088944
			104948
			226073
			BB/E007511/1
			BB/G022577/1
			BB/J007471/1
			BB/K016970/1
			BB/M011674/1
			BB/M013146/1
			R01GM079429-01A1
		After:
			088944
			104948
			226073
			284209
			BB/E007511/1
			BB/G022577/1
			BB/J007471/1
			BB/K016970/1
			BB/M011674/1
			BB/M013146/1
			GM079429
			MR/L007835/1
			R01GM079429-01A1
		Added:
			284209
			GM079429
			MR/L007835/1
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'The FAIRsharing Team' at 09:31, 07 Aug 2018 (approved):

	'grants' has been modified:
		Before:
			088944
			226073
			BB/E007511/1
			BB/G022577/1
			R01GM079429-01A1
		After:
			088944
			104948
			226073
			BB/E007511/1
			BB/G022577/1
			BB/J007471/1
			BB/K016970/1
			BB/M011674/1
			BB/M013146/1
			R01GM079429-01A1
		Added:
			104948
			BB/J007471/1
			BB/K016970/1
			BB/M011674/1
			BB/M013146/1
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'The FAIRsharing Team' at 09:26, 07 Aug 2018 (approved):

	'organizations' has been modified:
		Before:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			West-Life|http://about.west-life.eu/update/network/west-life/west-life|Funds
			Central European Institute of Technology|https://www.ceitec.eu/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
		After:
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk|Funds
			West-Life|http://about.west-life.eu/update/network/west-life/west-life|Funds
			Central European Institute of Technology|https://www.ceitec.eu/|Maintains
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			European Union (EU)|http://ec.europa.eu/chafea/|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
		Added:
			European Union (EU)|http://ec.europa.eu/chafea/|Funds
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			US National Institutes of Health (NIH)|https://www.nih.gov/|Funds
		Removed:

	'grants' has been modified:
		Before:
		After:
			088944
			226073
			BB/E007511/1
			BB/G022577/1
			R01GM079429-01A1
		Added:
			088944
			226073
			BB/E007511/1
			BB/G022577/1
			R01GM079429-01A1
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'The FAIRsharing Team' at 09:20, 07 Aug 2018 (approved):

	'miriam_id' has been modified:
		Before: None
		After: 

	'contact' has been modified:
		Before: None
		After: None

	'tools' has been modified:
		Before:
			OneDep: Data Deposition Portal||http://deposit-pdbe.wwpdb.org/
			search by sequence||http://www.ebi.ac.uk/pdbe-srv/PDBeXplore/sequence/
			PDBeFold- Search by structure||http://www.ebi.ac.uk/msd-srv/ssm/
			EMDB||http://www.ebi.ac.uk/pdbe/emdb
			Search||http://www.pdbe.org
			EMPIAR||http://www.ebi.ac.uk/pdbe/empiar
			wwPDB Validation Service||http://validate.wwpdb.org
		After:
			EMDB||http://www.ebi.ac.uk/pdbe/emdb
			PDBePISA||http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
			wwPDB Validation Service||http://validate.wwpdb.org
		Added:
			PDBePISA||http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
		Removed:
			OneDep: Data Deposition Portal||http://deposit-pdbe.wwpdb.org/
			search by sequence||http://www.ebi.ac.uk/pdbe-srv/PDBeXplore/sequence/
			PDBeFold- Search by structure||http://www.ebi.ac.uk/msd-srv/ssm/
			Search||http://www.pdbe.org
			EMPIAR||http://www.ebi.ac.uk/pdbe/empiar

	'dataProcesses' has been modified:
		Before:
			Download
			Manual curation
		After:
			Download
			Manual curation
			OneDep: Data Deposition Portal
			search by sequence
			PDBeFold- Search by structure
			Search
		Added:
			OneDep: Data Deposition Portal
			search by sequence
			PDBeFold- Search by structure
			Search
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'PDBe' at 14:34, 22 Mar 2017 (approved):

	'miriam_url' has been modified:
		Before: None
		After: http://www.ebi.ac.uk/miriam/main/resources/MIR:00100037 Tools have changed:  Previous values: Deposit search by sequence PDBeFold- Search by structure EMDB Search EMPIAR New values:  OneDep: Data Deposition Portal search by sequence PDBeFold- Search by structure EMDB Search EMPIAR wwPDB Validation Service Organisations have changed:  Previous values: EMBL Swiss Institute of Bioinformatics (SIB)|Switzerland The Wellcome Trust|UK New values:  EMBL Swiss Institute of Bioinformatics (SIB)|Switzerland The Wellcome Trust|UK CEITEC|Masaryk University|Czech Republic West-Life

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'PDBe' at 14:21, 21 Mar 2017 (approved):

	'miriam_url' has been modified:
		Before: None
		After: http://www.ebi.ac.uk/miriam/main/resources/MIR:00100037 Tools have changed:  Previous values: Deposit search by sequence PDBeFold- Search by structure EMDB Search EMPIAR New values:  OneDep: Data Deposition Portal search by sequence PDBeFold- Search by structure EMDB Search EMPIAR wwPDB Validation Service Organisations have changed:  Previous values: EMBL Swiss Institute of Bioinformatics (SIB)|Switzerland The Wellcome Trust|UK New values:  EMBL Swiss Institute of Bioinformatics (SIB)|Switzerland The Wellcome Trust|UK CEITEC|Masaryk University|Czech Republic West-Life

Edits to 'https://fairsharing.org/FAIRsharing.26ek1v' by 'PDBe' at 19:40, 01 Aug 2016 (approved):

	'description' has been modified:
		Before: The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.
		After: The Protein Data Bank in Europe is a founding member of the worldwide Protein Data Bank which collects, organises and disseminates data on biological macromolecular structures.

In Collections

EOSC-Life

Bioschemas

ELIXIR Core Data Resources and Deposition Databases

RDA Covid-19 WG Resources

Support

General

contact form	PDBe Contact Form
contact form	Contact Information
online documentation	News
online documentation	PDBe Documentation
training	PDBe Training
twitter	@PDBeurope

Additional Information

Contact

PDBe Helpdesk

TeSS training resources

PDBe: Searching for biological macromolecular structures

PDBe: Exploring a Protein Data Bank (PDB) entry

PDBe: An introduction to search and entry pages: webinar

PDBe: Searching the Protein Data Bank

PDBe: Quick tour

Tools

EMDB	http://www.ebi.ac.uk/pdbe/emdb
wwPDB Validation Service	http://validate.wwpdb.org
Full PDBe Tools List	https://www.ebi.ac.uk/pdbe/services

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

Deposit

https://www.ebi.ac.uk/pdbe/deposition

Data Access

Download	ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb/data/structures/all
search by sequence	http://www.ebi.ac.uk/pdbe-srv/PDBeXplore/sequence/
PDBeFold- Search by structure	http://www.ebi.ac.uk/msd-srv/ssm/

REST Web Services

REST calls based on PDB entry data

https://www.ebi.ac.uk/pdbe/pdbe-rest-api

Publications

PDBe: Protein Data Bank in Europe.

Velankar S., Alhroub Y., Best C., Caboche S., Conroy MJ., Dana JM., Fernandez Montecelo MA., van Ginkel G., Golovin A., Gore SP., Gutmanas A., Haslam P., Hendrickx PM., Heuson E., Hirshberg M., John M., Lagerstedt I., Mir S., Newman LE., Oldfield TJ., Patwardhan A., Rinaldi L., Sahni G., Sanz-García E., Sen S., Slowley R., Suarez-Uruena A., Swaminathan GJ., Symmons MF., Vranken WF., Wainwright M., Kleywegt GJ.,
Nucleic Acids Res. 2012