Open Modeling EXchange format
How to cite this record FAIRsharing.org: OMEX; Open Modeling EXchange format; DOI: https://doi.org/10.25504/FAIRsharing.27tnee; Last edited: Feb. 14, 2020, 5:07 p.m.; Last accessed: Nov 25 2020 7:49 p.m.
Record added: May 19, 2016, 2:18 p.m.
Record updated: Feb. 10, 2020, 9:19 a.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.27tnee' by 'The FAIRsharing Team' at 09:19, 10 Feb 2020 (approved): 'supportLinks' has been modified: Before: After: forum|https://groups.google.com/forum/?hl=en-GB#!forum/combine-archive forum|https://groups.google.com/forum/?hl=en-GB#!forum/combine-support Added: forum|https://groups.google.com/forum/?hl=en-GB#!forum/combine-archive forum|https://groups.google.com/forum/?hl=en-GB#!forum/combine-support Removed:
Edits to 'https://fairsharing.org/FAIRsharing.27tnee' by 'The FAIRsharing Team' at 09:17, 10 Feb 2020 (approved): 'user_defined_tags' has been modified: Before: After: Data sharing Data standards Added: Data sharing Data standards Removed: 'miriam_id' has been modified: Before: None After: 'dataProcesses' has been modified: Before: After: COMBINE Archive Specification Added: COMBINE Archive Specification Removed:
No XSD schemas defined
Conditions of UseApplies to: Data use
- Public domain
|COMBINE Archive Specification||http://co.mbine.org/specifications/omex.version-1.pdf|
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
Bergmann FT,Adams R,Moodie S,Cooper J,Glont M,Golebiewski M,Hucka M,Laibe C,Miller AK,Nickerson DP,Olivier BG,Rodriguez N,Sauro HM,Scharm M,Soiland-Reyes S,Waltemath D,Yvon F,Le Novere N
BMC Bioinformatics 2014
No semantic standards defined
Models and Formats
No identifier schema standards defined
No metrics standards defined
BioSimulators is a registry of containerized biosimulation tools that provide consistent command-line interfaces. The BioSimulations web application helps investigators browse this registry to find simulation tools that have the capabilities (supported modeling frameworks, simulation algorithms, and modeling formats) needed for specific modeling projects.
BioSimulations is a web application for sharing and re-using biomodels, simulations, and visualizations of simulations results. BioSimulations supports a wide range of modeling frameworks (e.g., kinetic, constraint-based, and logical modeling), model formats (e.g., BNGL, CellML, SBML), and simulation tools (e.g., COPASI, libRoadRunner/tellurium, NFSim, VCell). BioSimulations aims to help researchers discover published models that might be useful for their research and quickly try them via a simple web-based interface.
This record is not implemented by any policy.
Innovative Medicines Initiative (IMI), Europe (Consortium)
Engineering and Physical Sciences Research Council (EPSRC), UK (Government body)
COmputational Modeling in BIology NEtwork (COMBINE) (Consortium)
115156 (Innovative Medicines Initiative (IMI), Europe)
EP/I017909/1 (Engineering and Physical Sciences Research Council (EPSRC), UK)
GM070923 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
NIH P50-GM094503 (The Virtual Physiological Rat Project)