FAIRsharing is now available for record creation, update, and search at https://beta.fairsharing.org, please visit us there! This read-only version of the legacy site will be replaced with the new version of FAIRsharing in the coming weeks.

ORTHOlogous MAmmalian Markers

Abbreviation:OrthoMaM

General Information

ORTHOlogous MAmmalian Markers database (OrthoMaM) describes the evolutionary dynamics of orthologous genes in mammalian genomes using a phylogenetic framework.

Homepage http://www.orthomam.univ-montp2.fr/orthomam/html/

Countries that developed this resource France

Created in 2007

Taxonomic range

Mammalia

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: OrthoMaM ; ORTHOlogous MAmmalian Markers; DOI: https://doi.org/10.25504/FAIRsharing.2GMztk; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Oct 24 2021 11:32 a.m.

This record is maintained by edouzery

Record added: Aug. 1, 2018, 2:08 p.m.
Record updated: Aug. 29, 2018, 4:46 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.2GMztk' by 'The FAIRsharing Team' at 16:46, 29 Aug 2018 (approved):

	'contactORCID' has been modified:
		Before: https://orcid.org/0000-0001-5286-647X
		After: 0000-0001-5286-647X

Edits to 'https://fairsharing.org/FAIRsharing.2GMztk' by 'The FAIRsharing Team' at 14:32, 01 Aug 2018 (approved):

	'supportLinks' has been modified:
		Before:
		After:
			help|http://www.orthomam.univ-montp2.fr/orthomam/html/index.php?article=help
		Added:
			help|http://www.orthomam.univ-montp2.fr/orthomam/html/index.php?article=help
		Removed:

	'publications' has been modified:
		Before:
		After:
			OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals.|Douzery EJ,Scornavacca C,Romiguier J,Belkhir K,Galtier N,Delsuc F,Ranwez V|Mol Biol Evol|2014
			OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics.|Ranwez V,Delsuc F,Ranwez S,Belkhir K,Tilak MK,Douzery EJ|BMC Evol Biol|2007
		Added:
			OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals.|Douzery EJ,Scornavacca C,Romiguier J,Belkhir K,Galtier N,Delsuc F,Ranwez V|Mol Biol Evol|2014
			OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics.|Ranwez V,Delsuc F,Ranwez S,Belkhir K,Tilak MK,Douzery EJ|BMC Evol Biol|2007
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			browse
			query
			blast
			Data release
		Added:
			browse
			query
			blast
			Data release
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.2GMztk' by 'The FAIRsharing Team' at 14:17, 01 Aug 2018 (approved):

	'organizations' has been modified:
		Before:
			Montpellier Bioinformatics Biodiversity platform|http://kimura.univ-montp2.fr/remydernat/presentations/2017/MBI/20170925_presentation.pdf|Funds
		After:
			Montpellier Bioinformatics Biodiversity platform|http://kimura.univ-montp2.fr/remydernat/presentations/2017/MBI/20170925_presentation.pdf|Funds
			 Agence Nationale de la Recherche Investissements davenir / Bioinformatique|http://www.agence-nationale-recherche.fr/investissementsdavenir/documents/ANR-AAP-BIOINFORMATIQUE-2010.pdf|Funds
			European Research Council (ERC)|https://erc.europa.eu/|Funds
		Added:
			 Agence Nationale de la Recherche Investissements davenir / Bioinformatique|http://www.agence-nationale-recherche.fr/investissementsdavenir/documents/ANR-AAP-BIOINFORMATIQUE-2010.pdf|Funds
			European Research Council (ERC)|https://erc.europa.eu/|Funds
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.2GMztk' by 'The FAIRsharing Team' at 14:15, 01 Aug 2018 (approved):

	'organizations' has been modified:
		Before:
		After:
			Montpellier Bioinformatics Biodiversity platform|http://kimura.univ-montp2.fr/remydernat/presentations/2017/MBI/20170925_presentation.pdf|Funds
		Added:
			Montpellier Bioinformatics Biodiversity platform|http://kimura.univ-montp2.fr/remydernat/presentations/2017/MBI/20170925_presentation.pdf|Funds
		Removed:

	'related_databases' has been modified:
		Before:
		After:
			Ensembl
		Added:
			Ensembl
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.2GMztk' by 'The FAIRsharing Team' at 14:12, 01 Aug 2018 (approved):

	'domains' has been modified:
		Before:
		After:
			Genome
			Life Science
			Orthologous
			Phylogenetics
		Added:
			Genome
			Life Science
			Orthologous
			Phylogenetics
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.2GMztk' by 'The FAIRsharing Team' at 14:10, 01 Aug 2018 (approved):

	'contactEmail' has been modified:
		Before: 
		After: emmanuel.douzery@univ-montp2.fr

	'contact' has been modified:
		Before: 
		After: Emmanuel Douzery

	'contactORCID' has been modified:
		Before: 
		After: https://orcid.org/0000-0001-5286-647X

Support

General

help	http://www.orthomam.univ-montp2.fr/ortho ...

Additional Information

Contact

Emmanuel Douzery ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Data Release

Data release

http://www.orthomam.univ-montp2.fr/orthomam/html/index.php?article=Ort ...

Data Access

browse	http://www.orthomam.univ-montp2.fr/orthomam/html/index.php?article=exo ...
query	http://www.orthomam.univ-montp2.fr/orthomam/html/index.php?article=Req ...
blast	http://www.orthomam.univ-montp2.fr/orthomam/html/index.php?article=bla ...

Publications

OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals.

Douzery EJ,Scornavacca C,Romiguier J,Belkhir K,Galtier N,Delsuc F,Ranwez V
Mol Biol Evol 2014

View Paper (PubMed) View Publication

OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics.

Ranwez V,Delsuc F,Ranwez S,Belkhir K,Tilak MK,Douzery EJ
BMC Evol Biol 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Ensembl

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by edouzery

Funds

The European Research Council (ERC) (Government body)
Montpellier Bioinformatics Biodiversity platform, France (Lab)
Agence Nationale de la Recherche Investissements davenir / Bioinformatique (Government body)

ORTHOlogous MAmmalian Markers

We need your help!

Developed by

Contact Us

About FAIRsharing