Catalytic Site Atlas

Abbreviation:CSA

General Information

This record was deprecated on April 10, 2018 for the following reason(s): This resource is now obsolete and, together with MACiE (https://fairsharing.org/FAIRsharing.7xkx69), has formed the basis of the M-CSA resource.

The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.

This record is replaced by:

Mechanism and Catalytic Site Atlas

Homepage http://www.ebi.ac.uk/thornton-srv/databases/CSA/

Countries that developed this resource Austria , Belgium , Croatia , Czech Republic , Denmark , Finland , France , Germany , Greece , Hungary , Iceland , Israel , Italy , Lithuania , Luxembourg , Malta , Montenegro , Netherlands , Norway , Portugal , Republic of Ireland , Slovakia , Spain , Sweden , Switzerland , United Kingdom

Created in 2003

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: CSA; Catalytic Site Atlas; DOI: https://doi.org/10.25504/FAIRsharing.2ajtcf; Last edited: Feb. 10, 2020, 5:15 p.m.; Last accessed: Sep 24 2020 11:10 a.m.

This record is maintained by AntonioRibeiro

Record updated: Feb. 10, 2020, 5:15 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.2ajtcf' by 'The FAIRsharing Team' at 17:15, 10 Feb 2020 (approved):

	'countries' has been modified:
		Before:
			European Union
		After:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Added:
			Austria
			Belgium
			Croatia
			Czech Republic
			Denmark
			Finland
			France
			Germany
			Greece
			Hungary
			Iceland
			Israel
			Italy
			Lithuania
			Luxembourg
			Malta
			Montenegro
			Netherlands
			Norway
			Portugal
			Republic of Ireland
			Slovakia
			Spain
			Sweden
			Switzerland
			United Kingdom
		Removed:
			European Union

Edits to 'https://fairsharing.org/FAIRsharing.2ajtcf' by 'The FAIRsharing Team' at 10:39, 17 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			United States Department of Energy, Office of Science, USA|http://science.energy.gov/ber/|Funds
			Engineering and Physical Sciences Research Council (EPSRC), UK|https://www.epsrc.ac.uk|Funds
			Midwest Center for Structural Genomics, USA|http://www.mcsg.anl.gov|Funds
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		After:
			United States Department of Energy, Office of Science, USA|http://science.energy.gov/ber/|Funds
			Engineering and Physical Sciences Research Council (EPSRC), UK|https://www.epsrc.ac.uk|Funds
			Midwest Center for Structural Genomics, USA|http://www.mcsg.anl.gov|Funds
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB), Switzerland|https://www.sib.swiss|Maintains

	'onto_domains' has been modified:
		Before:
			Enzymes
			structure
		After:
			Enzymes
			enzyme
			structure
		Added:
			enzyme
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.2ajtcf' by 'The FAIRsharing Team' at 21:35, 28 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Nicholas Furnham
		Added:
		Removed:

Support

General

help	http://www.ebi.ac.uk/thornton-srv/databa ...

Additional Information

Contact

Nicholas Furnham ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0

Data Access

Download	http://www.ebi.ac.uk/thornton-srv/databases/CSA_NEW/downloads/CSA_TABL ...
search	http://www.ebi.ac.uk/thornton-srv/databases/CSA_NEW/
Browse	http://www.ebi.ac.uk/thornton-srv/databases/CSA_NEW/BrowseByLit.php

Publications

The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data.

Porter CT., Bartlett GJ., Thornton JM.,
Nucleic Acids Res. 2004

View Paper (PubMed)

The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.

Furnham N,Holliday GL,de Beer TA,Jacobsen JO,Pearson WR,Thornton JM
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Protein Data Bank Format

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by AntonioRibeiro

Funds

United States Department of Energy, Office of Science, USA (Government body)
Engineering and Physical Sciences Research Council (EPSRC), UK (Government body)
Midwest Center for Structural Genomics, USA (Government body)
The Wellcome Trust, UK (Charitable foundation)

Maintains

European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute) Lead

Grant Number(s)

081989/Z/07/A (The Wellcome Trust, UK)
DE-AC02-06CH11357 (United States Department of Energy, Office of Science, USA)

Catalytic Site Atlas

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