standards > reporting guideline > DOI:10.25504/FAIRsharing.2b3at8


ready Marine Microbial Biodiversity, Bioinformatics, Biotechnology Checklist

Abbreviation: Micro B3


General Information
The Micro B3 checklist is a multi-disciplinary standard developed by the Micro B3 Consortium for description of marine microbial sampling. Content of the standard is grouped into six categories covering various aspects of marine microbial sampling. These categories are environment, measurement, sampling, event, sample and organism. Full adoption of the standard allows generation of data records, which are MIxS compliant but also compliant to minimal reporting requirements of the oceanographic and marine biodiversity community, i.e. respectively the Common Data Index (CDI) and the OBIS schema, advancing the metadata interoperability across research domains. Nucleotide sequences of marine microbial samples described according to the Micro B3 checklist can be placed into a very rich environmental context. This checklist had originally been called the M2B3 checklist

Homepage http://www.ebi.ac.uk/ena/submit/microb3-checklist

Countries that developed this resource Belgium , Germany , Netherlands , United Kingdom

Created in 2014

Taxonomic range

User-defined Tags





How to cite this record FAIRsharing.org: Micro B3; Marine Microbial Biodiversity, Bioinformatics, Biotechnology Checklist; DOI: https://doi.org/10.25504/FAIRsharing.2b3at8; Last edited: Feb. 26, 2020, 11:55 a.m.; Last accessed: Oct 21 2020 7:04 p.m.

Publication for citation  Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. Ten Hoopen P,Pesant S,Kottmann R,Kopf A,Bicak M,Claus S,Deneudt K,Borremans C,Thijsse P,Dekeyzer S,Schaap DM,Bowler C,Glockner FO,Cochrane G; Stand Genomic Sci ; 2015; 10.1186/s40793-015-0001-5;


This record is maintained by pth  ORCID

Record added: June 10, 2015, 10:45 a.m.
Record updated: Feb. 26, 2020, 11:55 a.m. by The FAIRsharing Team.

Show edit history


In Collections
RDA Covid-19 WG Resources


Support

General

online documentation OSD Handbook

Additional Information

Contact Petra ten Hoopen   ORCID

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use




Publications

Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards.

Ten Hoopen P,Pesant S,Kottmann R,Kopf A,Bicak M,Claus S,Deneudt K,Borremans C,Thijsse P,Dekeyzer S,Schaap DM,Bowler C,Glockner FO,Cochrane G
Stand Genomic Sci 2015

View Paper (PubMed) View Publication

Related Standards

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (2)
European Nucleotide Archive
The European Nucleotide Archive (ENA) is a globally comprehensive data resource for nucleotide sequence, spanning raw data, alignments and assemblies, functional and taxonomic annotation and rich contextual data relating to sequenced samples and experimental design. Serving both as the database of record for the output of the world's sequencing activity and as a platform for the management, sharing and publication of sequence data, the ENA provides a portfolio of services for submission, data management, search and retrieval across web and programmatic interfaces. The ENA is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.
PANGAEA - Data Publisher for Earth and Environmental Science
The information system PANGAEA is operated as an Open Access library aimed at archiving, publishing and distributing georeferenced data from earth system research. PANGAEA is a member of the ICSU World Data System (WDS).

Implementing Policies

This record is not implemented by any policy.