standards > reporting guideline > DOI:10.25504/FAIRsharing.2b3at8


ready Marine Microbial Biodiversity, Bioinformatics, Biotechnology Checklist

Abbreviation: Micro B3


General Information
The Micro B3 checklist is a multi-disciplinary standard developed by the Micro B3 Consortium for description of marine microbial sampling. Content of the standard is grouped into six categories covering various aspects of marine microbial sampling. These categories are environment, measurement, sampling, event, sample and organism. Full adoption of the standard allows generation of data records, which are MIxS compliant but also compliant to minimal reporting requirements of the oceanographic and marine biodiversity community, i.e. respectively the Common Data Index (CDI) and the OBIS schema, advancing the metadata interoperability across research domains. Nucleotide sequences of marine microbial samples described according to the Micro B3 checklist can be placed into a very rich environmental context. This checklist had originally been called the M2B3 checklist

Homepage http://www.ebi.ac.uk/ena/submit/microb3-checklist

Countries that developed this resource Belgium , Germany , Netherlands , United Kingdom

Created in 2014

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How to cite this record FAIRsharing.org: Micro B3; Marine Microbial Biodiversity, Bioinformatics, Biotechnology Checklist; DOI: https://doi.org/10.25504/FAIRsharing.2b3at8; Last edited: Jan. 17, 2019, 12:32 p.m.; Last accessed: Sep 16 2019 11:01 a.m.

Publication for citation  Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. Ten Hoopen P,Pesant S,Kottmann R,Kopf A,Bicak M,Claus S,Deneudt K,Borremans C,Thijsse P,Dekeyzer S,Schaap DM,Bowler C,Glockner FO,Cochrane G; Stand Genomic Sci ; 2015; 10.1186/s40793-015-0001-5;


This record is maintained by pth  ORCID

Record added: June 10, 2015, 10:45 a.m.
Record updated: Jan. 17, 2019, 12:32 p.m. by The FAIRsharing Team.

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online documentation OSD Handbook

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Contact Petra ten Hoopen   ORCID

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Applies to: Data use




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Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards.

Ten Hoopen P,Pesant S,Kottmann R,Kopf A,Bicak M,Claus S,Deneudt K,Borremans C,Thijsse P,Dekeyzer S,Schaap DM,Bowler C,Glockner FO,Cochrane G
Stand Genomic Sci 2015

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Implementing Databases (2)
European Nucleotide Archive
The European Nucleotide Archive (ENA) is a globally comprehensive data resource for nucleotide sequence, spanning raw data, alignments and assemblies, functional and taxonomic annotation and rich contextual data relating to sequenced samples and experimental design. Serving both as the database of record for the output of the world's sequencing activity and as a platform for the management, sharing and publication of sequence data, the ENA provides a portfolio of services for submission, data management, search and retrieval across web and programmatic interfaces. The ENA is part of the International Nucleotide Sequence Database Collaboration.
PANGAEA - Data Publisher for Earth and Environmental Science
The information system PANGAEA is operated as an Open Access library aimed at archiving, publishing and distributing georeferenced data from earth system research. PANGAEA is a member of the ICSU World Data System (WDS).

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