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Infection Disease Ontology Malaria

Abbreviation: IDOMAL

General Information

An application ontology for malaria extending the infectious disease ontology (IDO). With about half a billion cases, of which nearly one million fatal ones, malaria constitutes one of the major infectious diseases worldwide. A recently revived effort to eliminate the disease also focuses on IT resources for its efficient control, which prominently includes the control of the mosquito vectors that transmit the Plasmodium pathogens. As part of this effort, IDOMAL has been developed and it is continually being updated.

Homepage https://www.vectorbase.org/ontology-browser

Countries that developed this resource Greece

Created in 2010

Taxonomic range

Plasmodium falciparum

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: IDOMAL; Infection Disease Ontology Malaria; DOI: https://doi.org/10.25504/FAIRsharing.2q8c28; Last edited: April 27, 2019, 11:41 p.m.; Last accessed: May 19 2019 4:07 p.m.

Publication for citation IDOMAL: the malaria ontology revisited. Topalis P,Mitraka E,Dritsou V,Dialynas E,Louis C; J Biomed Semantics ; 2013; 10.1186/2041-1480-4-16;

Record updated: April 27, 2019, 11:40 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.2q8c28' by 'The FAIRsharing Team' at 23:39, 27 Apr 2019 (not approved):

	'organizations' has been modified:
		Before:
			European Commission|http://ec.europa.eu/|Funds
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains,Funds
			VectorBase|https://www.vectorbase.org|Maintains
		After:
			European Commission|http://ec.europa.eu/|Funds
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Funds
			VectorBase|https://www.vectorbase.org|Maintains
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
		Added:
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Funds
			European Molecular Biology Laboratory (EMBL), Heidelberg, Germany|http://www.embl.org|Funds
		Removed:
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains,Funds

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			contact form|https://www.vectorbase.org/contact
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			contact form|https://www.vectorbase.org/contact
			email|info@vectorbase.org
			twitter|@VectorBase
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			email|info@vectorbase.org
			twitter|@VectorBase
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			Biomedical Science
			Life Sciences
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			Biomedical Science
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			Medical Microbiology, Molecular Infection Biology
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			Medical Microbiology, Molecular Infection Biology
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			Infectious Disease Ontology Core
			Basic Formal Ontology
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			Infectious Disease Ontology Core
			Basic Formal Ontology
			Ontology for Parasite LifeCycle
			Dengue Fever Ontology
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			Ontology for Parasite LifeCycle
			Dengue Fever Ontology
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			browse
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		After: topalis@imbb.forth.gr

	'grants' has been modified:
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			FP7 201588
			FP7 223736
			HHSN266200400039C
			HHSN272200900039C
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			FP7 201588
			FP7 223736
			HEALTH-F3-2009-242095
			HHSN266200400039C
			HHSN272200900039C
			LSHP-CT-2004-503578
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			HEALTH-F3-2009-242095
			LSHP-CT-2004-503578
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Edits to 'https://fairsharing.org/FAIRsharing.2q8c28' by 'The FAIRsharing Team' at 10:19, 11 Mar 2019 (approved):

	'licences' has been modified:
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			GNU General Public License (GPL) 3.0|https://www.gnu.org/licenses/gpl.html|Data
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			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
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			Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
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			GNU General Public License (GPL) 3.0|https://www.gnu.org/licenses/gpl.html|Data

	'organizations' has been modified:
		Before:
			European Commission|http://ec.europa.eu/|Funds
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Funds
			VectorBase|https://www.vectorbase.org|Maintains
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains
		After:
			European Commission|http://ec.europa.eu/|Funds
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains,Funds
			VectorBase|https://www.vectorbase.org|Maintains
		Added:
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains,Funds
		Removed:
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Funds
			Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA|https://www.niaid.nih.gov/research/bioinformatics-resource-centers|Maintains

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In Collections

OBO Foundry

Support

General

contact form	https://www.vectorbase.org/contact
support email	General contact
twitter	Twitter

Additional Information

Contact

Pantelis Topalis ORCID

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/IDOMAL

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication

Data Access

browse	https://www.vectorbase.org/ontology-browser
search	https://www.vectorbase.org/ontology-browser
download	https://www.vectorbase.org/downloads?field_download_file_type_tid%5B%5 ...

Publications

IDOMAL: the malaria ontology revisited.

Topalis P,Mitraka E,Dritsou V,Dialynas E,Louis C
J Biomed Semantics 2013

View Paper (PubMed) View Publication

IDOMAL: an ontology for malaria.

Topalis P,Mitraka E,Bujila I,Deligianni E,Dialynas E,Siden-Kiamos I,Troye-Blomberg M,Louis C
Malar J 2010

View Paper (PubMed) View Publication

IDOMAL Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (2)

VectorBase
VectorBase is a web-accessible data repository for information about invertebrate vectors of human pathogens. VectorBase annotates and maintains vector genomes providing an integrated resource for the research community. Currently, VectorBase contains genome information for 38 organisms including Anopheles gambiae, a vector for the Plasmodium protozoan agent causing malaria, and Aedes aegypti, a vector for the flaviviral agents causing Yellow fever and Dengue fever. Recent additions include large scale variant (SNP) datasets and population genetics data (genotype/phenotype).

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

European Commission (Government body)
Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA (Government body)
European Molecular Biology Laboratory (EMBL), Heidelberg, Germany (Government body)

Maintains

VectorBase (Research institute)

Grant Number(s)

FP7 201588 (European Commission)
FP7 223736 (European Commission)
HEALTH-F3-2009-242095 (European Molecular Biology Laboratory (EMBL), Heidelberg, Germany)
HHSN266200400039C (Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA)
HHSN272200900039C (Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD, USA)
LSHP-CT-2004-503578 (European Molecular Biology Laboratory (EMBL), Heidelberg, Germany)

Infection Disease Ontology Malaria

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