IBP Cowpea Trait Ontology

Abbreviation: CO_340

General Information

The Cowpea Trait Ontology is part of the Crop Ontology (CO) project. The Crop Ontology has been created to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms. The concepts of the CO are being used to curate agronomic databases and describe the data. The use of ontology terms to describe agronomic phenotypes and the accurate mapping of these descriptions into databases is important in comparative phenotypic and genotypic studies across species and gene-discovery experiments as it provides harmonized description of the data and therefore facilitates the retrieval of information.

Homepage http://www.cropontology.org/ontology/CO_340/Cowpea

Countries that developed this resource Worldwide

Created in 2015

Taxonomic range

Vigna unguiculata

Knowledge Domains

Subjects

User-defined Tags

Plant Phenotypes and Traits

How to cite this record FAIRsharing.org: CO_340; IBP Cowpea Trait Ontology; DOI: https://doi.org/10.25504/FAIRsharing.31apg2; Last edited: Feb. 26, 2019, 9:38 a.m.; Last accessed: Jul 20 2019 8:59 a.m.

Record added: Jan. 18, 2018, 3:41 p.m.
Record updated: Feb. 26, 2019, 9:36 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.31apg2' by 'The FAIRsharing Team' at 09:36, 26 Feb 2019 (approved):

	'user_defined_tags' has been modified:
		Before:
			Data standards
			General purpose
			Plant Phenotypes and Traits
		After:
			Plant Phenotypes and Traits
		Added:
		Removed:
			Data standards
			General purpose

Edits to 'https://fairsharing.org/FAIRsharing.31apg2' by 'The FAIRsharing Team' at 11:07, 04 Sep 2018 (approved):

	'dataProcesses' has been modified:
		Before:
			Download OBO Format
			Download RDF
			Download CSV
			Add new terms
			Browse
		After:
			Download OBO Format
			Download RDF
			Download CSV
			Add new terms
			Browse
			Annotation tool
			Login
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			Annotation tool
			Login
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Edits to 'https://fairsharing.org/FAIRsharing.31apg2' by 'The FAIRsharing Team' at 16:21, 31 Aug 2018 (approved):

	'domains' has been modified:
		Before:
			Agriculture
			Botany
			Food
			General purpose
			Phenotype
			Plant Phenotypes and Traits
		After:
			Agriculture
			Botany
			Data standards
			Food
			General purpose
			Life Science
			Phenotype
			Plant Phenotypes and Traits
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			Data standards
			Life Science
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	'supportLinks' has been modified:
		Before:
			forum|http://www.cropontology.org/feedback
			online documentation|http://agroportal.lirmm.fr/ontologies/CO_340
		After:
			forum|http://www.cropontology.org/feedback
			help|http://www.cropontology.org/help
			online documentation|http://agroportal.lirmm.fr/ontologies/CO_340
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			help|http://www.cropontology.org/help
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	'publications' has been modified:
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		After:
			Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice.|Shrestha R,Matteis L,Skofic M,Portugal A,McLaren G,Hyman G,Arnaud E|Front Physiol|2012
		Added:
			Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice.|Shrestha R,Matteis L,Skofic M,Portugal A,McLaren G,Hyman G,Arnaud E|Front Physiol|2012
		Removed:

	'dataProcesses' has been modified:
		Before:
			Download OBO Format
			Download RDF
			Download CSV
		After:
			Download OBO Format
			Download RDF
			Download CSV
			Add new terms
			Browse
		Added:
			Add new terms
			Browse
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.31apg2' by 'The FAIRsharing Team' at 16:11, 31 Aug 2018 (approved):

	'domains' has been modified:
		Before:
			Agriculture
			Botany
			Food
			Phenotype
			Plant Phenotypes and Traits
		After:
			Agriculture
			Botany
			Food
			General purpose
			Phenotype
			Plant Phenotypes and Traits
		Added:
			General purpose
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.31apg2' by 'The FAIRsharing Team' at 12:09, 12 Apr 2018 (approved):

	'in_curation' has been modified:
		Before: True
		After: False

Edits to 'https://fairsharing.org/FAIRsharing.31apg2' by 'The FAIRsharing Team' at 19:27, 25 Jan 2018 (approved):

	'accessPoints' has been modified:
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			REST|http://www.cropontology.org/api|Crop Ontology API
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			REST|http://www.cropontology.org/api|Crop Ontology API
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Edits to 'https://fairsharing.org/FAIRsharing.31apg2' by 'The FAIRsharing Team' at 09:35, 24 Jan 2018 (approved):

	'homepage' has been modified:
		Before: http://www.cropontology.org/rdf/
		After: http://www.cropontology.org/ontology/CO_340/Cowpea

Support

General

forum	Crop Ontology Forum
help	Video tutorials
online documentation	Agroportal link

Additional Information

Contact

Crop Ontology Helpdesk

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Curation

Add new terms	http://www.cropontology.org/add-ontology
Annotation tool	http://www.cropontology.org/annotation-tool

Data Access

Download OBO Format	http://www.cropontology.org/obo/CO_340
Download RDF	http://www.cropontology.org/ontology/CO_340/Cowpea/nt
Download CSV	http://www.cropontology.org/report?ontology_id=CO_340
Browse	http://www.cropontology.org/ontology/CO_340/Cowpea
Login	http://www.cropontology.org/ontology/CO_340/Cowpea

REST Web Services

Crop Ontology API

http://www.cropontology.org/api

Publications

Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice.

Shrestha R,Matteis L,Skofic M,Portugal A,McLaren G,Hyman G,Arnaud E
Front Physiol 2012

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Crop Ontology

Models and Formats

Web Ontology Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (2)

Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.

AgroPortal
The AgroPortal project reuses the biomedical domain’s semantic tools and insights to serve agronomy, but also food, plant, agriculture and biodiversity sciences. We offer a portal that features ontology hosting, search, versioning, visualization, comment, and recommendation; enables semantic annotation; stores and exploits ontology alignments; and enables interoperation with the semantic web. The AgroPortal specifically satisfies requirements of the agronomy community in terms of ontology formats (e.g., SKOS vocabularies and trait dictionaries) and supported features (offering detailed metadata and advanced annotation capabilities). The AgroPortal content is automatically retrieved by FAIRsharing.org (https://fairsharing.org/) and the Agrisemantics Map of Data Standards (http://vest.agrisemantics.org/).

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Maintains

CGIAR Research Program on Grain Legumes (Consortium)
International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria (Research institute)

IBP Cowpea Trait Ontology

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