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BindingDB database of measured binding affinities

Abbreviation:BindingDB

Recommended

General Information

BindingDB enables research by making a growing collection of high-quality, quantitative, protein-ligand binding data findable and usable. Funded by NIGMS/NIH.

Homepage http://www.bindingdb.org

Countries that developed this resource United States

Created in 2000

Taxonomic range

Not applicable

Knowledge Domains

Subjects

User-defined Tags

Drug Target

Drug-like compound

In the following recommendations:

How to cite this record FAIRsharing.org: BindingDB; BindingDB database of measured binding affinities; DOI: https://doi.org/10.25504/FAIRsharing.3b36hk; Last edited: Dec. 27, 2020, 8:27 a.m.; Last accessed: Aug 01 2021 12:04 a.m.

This record is maintained by mkgilson

Record updated: Dec. 21, 2020, 8:17 p.m. by mkgilson.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.3b36hk' by 'mkgilson' at 20:17, 21 Dec 2020 (approved):

	'user_defined_tags' has been modified:
		Before:
			Drug Target
		After:
			Drug Target
			Drug-like compound
		Added:
			Drug-like compound
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	'onto_disciplines' has been modified:
		Before:
			Chemistry
			Computational Chemistry
			Life Science
		After:
			Chemistry
			Computational Chemistry
			Drug Discovery
			Life Science
			Medicinal Chemistry
		Added:
			Drug Discovery
			Medicinal Chemistry
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	'onto_domains' has been modified:
		Before:
			Drug Interaction
			Protein interactions
			affinity
			binding_site
			protein
		After:
			Drug Interaction
			Protein interactions
			affinity
			binding_site
			drug binding
			protein
		Added:
			drug binding
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.3b36hk' by 'mkgilson' at 20:16, 21 Dec 2020 (approved):

	'description' has been modified:
		Before: BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules.
		After: BindingDB enables research by making a growing collection of high-quality, quantitative, protein-ligand binding data findable and usable. Funded by NIGMS/NIH.

	'yearOfCreation' has been modified:
		Before: None
		After: 2000

	'onto_disciplines' has been modified:
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			Life Science
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			Chemistry
			Computational Chemistry
			Life Science
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			Chemistry
			Computational Chemistry
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	'contactEmail' has been modified:
		Before: gilson@umbi.umd.edu
		After: mgilson@health.ucsd.edu

	'taxonomies' has been modified:
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			All
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			All

	'contactORCID' has been modified:
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		After: 0000-0002-3375-1738

Edits to 'https://fairsharing.org/FAIRsharing.3b36hk' by 'The FAIRsharing Team' at 05:12, 06 Dec 2016 (approved):

	'contactName' has been modified:
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Support

General

contact form	http://www.bindingdb.org/bind/sendmail.j ...
help	http://www.bindingdb.org/bind/info.jsp

Additional Information

Contact

Michael K. Gilson ORCID

Tools

BLAST

http://www.bindingdb.org/bind/BySequence.jsp

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution-NonCommercial-NoDerivs 2.5 Generic (CC BY-NC-ND 2.5)

Data Curation

Submit

http://www.bindingdb.org/bind/contributedata.jsp

Data Access

Download

http://www.bindingdb.org/bind/chemsearch/marvin/PolicyNotice.jsp?all_d ...

REST Web Services

RESTful API

http://bindingdb.org/bind/BindingDBRESTfulAPI.jsp

Publications

BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities.

Liu T., Lin Y., Wen X., Jorissen RN., Gilson MK.,
Nucleic Acids Res. 2007

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Chemical Entities of Biological Interest

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by mkgilson

Funds

National Science Foundation (NSF), USA (Government body)
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)

Maintains

BindingDB (Lab)

Grant Number(s)

9808318 (National Science Foundation (NSF), USA)
GM070064 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)

BindingDB database of measured binding affinities

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