standards > terminology artifact > DOI:10.25504/FAIRsharing.3e0sn4


ready Gene Expression Ontology

Abbreviation:GeXO


General Information
An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, and orthology relations using ontological properties from RO and ISO.

Homepage http://www.semantic-systems-biology.org/apo

Developed in Norway

Created in 2012






How to cite this record FAIRsharing.org: GeXO; Gene Expression Ontology; DOI: https://doi.org/10.25504/FAIRsharing.3e0sn4; Last edited: Feb. 22, 2018, 2:15 p.m.; Last accessed: Sep 25 2018 10:16 p.m.


This record is maintained by MKuiper  ORCID

Record updated: Aug. 31, 2016, 10:43 a.m. by The FAIRsharing Team.




Support

No support information provided.

Additional Information

Contact Martin Kuiper

External Links

Bioportal http://bioportal.bioontology.org/ontologies/GEXO

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

Finding gene regulatory network candidates using the gene expression knowledge base.

Venkatesan A,Tripathi S,Sanz de Galdeano A,Blonde W,Laegreid A,Mironov V,Kuiper M
BMC Bioinformatics 2014

View Paper (PubMed) View Publication

GEXO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.


Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined


Implementing Databases (2)
IntAct molecular interaction database
IntAct provides a freely available, open source database system and analysis tools for protein interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.
UniPathway
UniPathway is a manually curated resource of metabolic pathways for the UniProtKB/Swiss-Prot knowledgebase. It provides a structured controlled vocabulary to describe the role of a protein in a metabolic pathway.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

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