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Gene Expression Ontology

Abbreviation: GeXO

General Information

An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, and orthology relations using ontological properties from RO and ISO.

Homepage https://www.biogateway.eu/tools/#GeXKB

Countries that developed this resource Norway

Created in 2012

Taxonomic range

Homo sapiens

Mus musculus

Rattus norvegicus

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: GeXO; Gene Expression Ontology; DOI: https://doi.org/10.25504/FAIRsharing.3e0sn4; Last edited: July 26, 2019, 9 p.m.; Last accessed: Apr 07 2020 2:12 a.m.

This record is maintained by MKuiper ORCID

Record updated: July 26, 2019, 8:55 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.3e0sn4' by 'The FAIRsharing Team' at 20:55, 26 Jul 2019 (approved):

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Edits to 'https://fairsharing.org/FAIRsharing.3e0sn4' by 'The FAIRsharing Team' at 20:54, 26 Jul 2019 (approved):

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			Gene expression data
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Edits to 'https://fairsharing.org/FAIRsharing.3e0sn4' by 'The FAIRsharing Team' at 13:40, 04 Jul 2019 (approved):

	'organizations' has been modified:
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			Norwegian Cancer Society|https://kreftforeningen.no/en/main-priorities/|Funds
			Semantic Systems Biology Group|http://www.semantic-systems-biology.org/apo|Maintains
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			Norwegian Cancer Society|https://kreftforeningen.no/en/main-priorities/|Funds
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			Semantic Systems Biology Group|http://www.semantic-systems-biology.org/apo|Maintains

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			Life Sciences
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			Ontology and Terminology
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			Ontology and Terminology
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Support

No support information provided.

Additional Information

Contact

Martin Kuiper ORCID

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/GEXO

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Release

Download Ontology

https://www.bio.ntnu.no/ontology/GeXO/gexo.owl

Publications

Finding gene regulatory network candidates using the gene expression knowledge base.

Venkatesan A,Tripathi S,Sanz de Galdeano A,Blonde W,Laegreid A,Mironov V,Kuiper M
BMC Bioinformatics 2014

View Paper (PubMed) View Publication

GEXO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (2)

IntAct molecular interaction database
IntAct provides a freely available, open source database system and analysis tools for protein interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.

UniPathway
UniPathway is a manually curated resource of metabolic pathways for the UniProtKB/Swiss-Prot knowledgebase. It provides a structured controlled vocabulary to describe the role of a protein in a metabolic pathway.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by MKuiper ORCID

Funds

Norwegian Cancer Society

Gene Expression Ontology

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