standards > model/format > DOI:10.25504/FAIRsharing.3gxr9b


ready Simple Omnibus Format in Text

Abbreviation: SOFT


General Information
Using Simple Omnibus Format in Text (SOFT), researchers can readily upload and download data. The resource is text-based so can be compatible with simple spreadsheets and data applications. A SOFT file can simultaneously contain both tabulated data as well as descriptive information for a chain of related Platforms, Samples, and/or Series records.

Homepage http://www.ncbi.nlm.nih.gov/geo/info/soft2.html

Countries that developed this resource United States

Created in 2001

Taxonomic range




How to cite this record FAIRsharing.org: SOFT; Simple Omnibus Format in Text; DOI: https://doi.org/10.25504/FAIRsharing.3gxr9b; Last edited: Sept. 4, 2019, 9:23 p.m.; Last accessed: May 15 2021 1:15 p.m.


This record is maintained by barrett

Record updated: Sept. 4, 2019, 11:56 a.m. by The FAIRsharing Team.

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In Collections
RDA Covid-19 WG Resources


Support

General

help http://www.ncbi.nlm.nih.gov/geo/info/sof ...
online documentation http://www.ncbi.nlm.nih.gov/geo/info/sof ...

Additional Information

Contact Tanya Barrett

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

NCBI GEO: mining tens of millions of expression profiles--database and tools update.

Barrett T,Troup DB,Wilhite SE,Ledoux P,Rudnev D,Evangelista C,Kim IF,Soboleva A,Tomashevsky M,Edgar R
Nucleic Acids Res 2006

View Paper (PubMed) View Publication

NCBI GEO: mining millions of expression profiles--database and tools.

Barrett T,Suzek TO,Troup DB,Wilhite SE,Ngau WC,Ledoux P,Rudnev D,Lash AE,Fujibuchi W,Edgar R
Nucleic Acids Res 2004

View Paper (PubMed) View Publication

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.

Edgar R,Domrachev M,Lash AE
Nucleic Acids Res 2001

View Paper (PubMed)

Related Standards

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (3)
Rat Genome Database
The Rat Genome Database stores genetic, genomic, phenotype, and disease data generated from rat research. It provides access to corresponding data for eight other species, allowing cross-species comparison. Data curation is performed both manually and via an automated pipeline, giving RGD users integrated access to a wide variety of data to support their research.
Gene Expression Omnibus
The Gene Expression Omnibus (GEO) is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomic data submitted by the scientific community. In addition to data storage, a collection of web-based interfaces and applications are available to help users query and download the studies and gene expression patterns stored in GEO.
A CLAssification of Mobile genetic Elements
ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.

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Credit

Record Maintainer

  • This record is maintained by barrett

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