Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'The FAIRsharing Team' at 11:58, 25 Sep 2019 (approved):
'standardsImplemented' has been modified:
Before:
After:
Biological Pathway eXchange
Systems Biology Graphical Notation
Systems Biology Markup Language
MDL reaction Format
Structure Data Format
FASTA Sequence Format
Added:
Biological Pathway eXchange
Systems Biology Graphical Notation
Systems Biology Markup Language
MDL reaction Format
Structure Data Format
FASTA Sequence Format
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'The FAIRsharing Team' at 11:55, 25 Sep 2019 (approved):
'organizations' has been modified:
Before:
University of Alberta, Canada|https://www.ualberta.ca/|Undefined
After:
University of Alberta, Canada|https://www.ualberta.ca/|Maintains
Added:
University of Alberta, Canada|https://www.ualberta.ca/|Maintains
Removed:
University of Alberta, Canada|https://www.ualberta.ca/|Undefined
'supportLinks' has been modified:
Before:
After:
help|http://pathbank.org/pathwhiz/style_guide
help|http://pathbank.org/legend
online documentation|http://pathbank.org/stats
online documentation|http://pathbank.org/about
Added:
help|http://pathbank.org/pathwhiz/style_guide
help|http://pathbank.org/legend
online documentation|http://pathbank.org/stats
online documentation|http://pathbank.org/about
Removed:
'description' has been modified:
Before: PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. It is able to do so, in part, by providing detailed, fully searchable, hyperlinked diagrams of metabolic, signalling, disease, drug, and physiological pathways. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. Each small molecule is hyperlinked to detailed descriptions contained in the HMDB or DrugBank and each protein complex or enzyme complex is hyperlinked to UniProt. All PathBank pathways are accompanied with detailed descriptions and references, providing an overview of the pathway, condition, or processes depicted in each diagram. The database is easily browsed and supports full text, sequence, and chemical structure searching. Users may query PathBank with lists of metabolite names, drug names, genes/protein complex names, SwissProt IDs, GenBank IDs, Affymetrix IDs, or Agilent microarray IDs. These queries will produce lists of matching pathways and highlight the matching molecules on each of the pathway diagrams. Gene, metabolite, and protein complex concentration data can also be visualized through PathBank's mapping interface. Each of PathBank's images, descriptions, and tables are downloadable in several formats. PathBank is made available under the Open Database License.
After: PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.
'onto_disciplines' has been modified:
Before:
Animal Genetics
Bioinformatics
Biology
Cell Biology
Cheminformatics
Database Management
Drug Metabolism
Endocrinology, Diabetology
Genetics
Human Genetics
Medical Informatics
Metabolism, Biochemistry and Genetics of Microorganisms
Metabolomics
Microbiology
Molecular biology
Plant Genetics
Proteomics
After:
Animal Genetics
Bioinformatics
Biology
Cell Biology
Cheminformatics
Database Management
Drug Metabolism
Endocrinology, Diabetology
Genetics
Human Genetics
Medical Informatics
Metabolism, Biochemistry and Genetics of Microorganisms
Metabolomics
Microbiology
Molecular biology
Plant Genetics
Proteomics
Systems biology
Transcriptomics
Added:
Systems biology
Transcriptomics
Removed:
'dataProcesses' has been modified:
Before:
After:
Browse Pathways
Table of Primary Pathways
Browse by Compound
Browse by Protein
Text Search
Path-MAP Advanced Search
Search by Structure
Search by Molecular Weight
Sequence Search
Download
Added:
Browse Pathways
Table of Primary Pathways
Browse by Compound
Browse by Protein
Text Search
Path-MAP Advanced Search
Search by Structure
Search by Molecular Weight
Sequence Search
Download
Removed:
'onto_domains' has been modified:
Before:
Drug Interaction
Drug name
Enzymes
Gene name
Protein interactions
Protein name
Protein sequence
Protein-Protein Interaction
Reaction data
Receptor
catalytic activity
disease
drug
drug metabolic process
enzymatic reaction
enzyme
gene
genetic disorder
glucose metabolic process
metabolite
protein
regulation of gene expression
signaling
After:
Drug Interaction
Drug name
Enzymes
Gene name
Protein interactions
Protein name
Protein sequence
Protein structure
Protein-Protein Interaction
Reaction data
Receptor
catalytic activity
disease
drug
drug metabolic process
enzymatic reaction
enzyme
gene
genetic disorder
glucose metabolic process
metabolite
protein
regulation of gene expression
signaling
Added:
Protein structure
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'dwishart' at 20:06, 24 Sep 2019 (approved):
'organizations' has been modified:
Before:
After:
University of Alberta, Canada|https://www.ualberta.ca/|Undefined
Added:
University of Alberta, Canada|https://www.ualberta.ca/|Undefined
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'dwishart' at 20:05, 24 Sep 2019 (approved):
'licences' has been modified:
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After:
Open Data Commons Open Database License (ODC ODbL)|http://opendatacommons.org/licenses/odbl/1.0/|Data
Added:
Open Data Commons Open Database License (ODC ODbL)|http://opendatacommons.org/licenses/odbl/1.0/|Data
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'dwishart' at 20:03, 24 Sep 2019 (approved):
'user_defined_tags' has been modified:
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After:
Drug Target
Pathway
Pathway Diagram
Added:
Drug Target
Pathway
Pathway Diagram
Removed:
'onto_disciplines' has been modified:
Before:
After:
Animal Genetics
Bioinformatics
Biology
Cell Biology
Cheminformatics
Database Management
Drug Metabolism
Endocrinology, Diabetology
Genetics
Human Genetics
Medical Informatics
Metabolism, Biochemistry and Genetics of Microorganisms
Metabolomics
Microbiology
Molecular biology
Plant Genetics
Proteomics
Added:
Animal Genetics
Bioinformatics
Biology
Cell Biology
Cheminformatics
Database Management
Drug Metabolism
Endocrinology, Diabetology
Genetics
Human Genetics
Medical Informatics
Metabolism, Biochemistry and Genetics of Microorganisms
Metabolomics
Microbiology
Molecular biology
Plant Genetics
Proteomics
Removed:
'onto_domains' has been modified:
Before:
After:
Drug Interaction
Drug name
Enzymes
Gene name
Protein interactions
Protein name
Protein sequence
Protein-Protein Interaction
Reaction data
Receptor
catalytic activity
disease
drug
drug metabolic process
enzymatic reaction
enzyme
gene
genetic disorder
glucose metabolic process
metabolite
protein
regulation of gene expression
signaling
Added:
Drug Interaction
Drug name
Enzymes
Gene name
Protein interactions
Protein name
Protein sequence
Protein-Protein Interaction
Reaction data
Receptor
catalytic activity
disease
drug
drug metabolic process
enzymatic reaction
enzyme
gene
genetic disorder
glucose metabolic process
metabolite
protein
regulation of gene expression
signaling
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'dwishart' at 19:21, 24 Sep 2019 (approved):
'related_databases' has been modified:
Before:
After:
The Yeast Metabolome DataBase
DrugBank
UniProt Knowledgebase
The Human Metabolome Database
Added:
The Yeast Metabolome DataBase
DrugBank
UniProt Knowledgebase
The Human Metabolome Database
Removed:
'taxonomies' has been modified:
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After:
Arabidopsis thaliana
Bos taurus
Caenorhabditis elegans
Drosophila melanogaster
Escherichia coli
Homo sapiens
Mus musculus
Pseudomonas aeruginosa
Rattus norvegicus
Saccharomyces cerevisiae
Added:
Arabidopsis thaliana
Bos taurus
Caenorhabditis elegans
Drosophila melanogaster
Escherichia coli
Homo sapiens
Mus musculus
Pseudomonas aeruginosa
Rattus norvegicus
Saccharomyces cerevisiae
Removed: