Record added: Sept. 24, 2019, 7:19 p.m.
Record updated: April 16, 2021, 8:47 p.m. by The FAIRsharing Team.

Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'The FAIRsharing Team' at 20:47, 16 Apr 2021 (approved):

	'user_defined_tags' has been modified:
		Before:
			Drug Target
			Pathway
			Pathway Diagram
		After:
			Drug Target
			Pathway Diagram
		Added:
		Removed:
			Pathway

	'onto_domains' has been modified:
		Before:
			Drug Interaction
			Drug name
			Gene name
			Protein interactions
			Protein name
			Protein structure
			Protein-Protein Interaction
			Reaction data
			Receptor
			catalytic activity
			disease
			drug
			drug metabolic process
			enzymatic reaction
			enzyme
			gene
			genetic disorder
			glucose metabolic process
			metabolite
			polypeptide_region
			protein
			regulation of gene expression
			signaling
		After:
			Drug Interaction
			Drug name
			Gene name
			Protein interactions
			Protein name
			Protein structure
			Protein-Protein Interaction
			Reaction data
			Receptor
			catalytic activity
			disease
			drug
			drug metabolic process
			enzymatic reaction
			enzyme
			gene
			genetic disorder
			glucose metabolic process
			metabolite
			pathway
			polypeptide_region
			protein
			regulation of gene expression
			signaling
		Added:
			pathway
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'The FAIRsharing Team' at 11:58, 25 Sep 2019 (approved):

	'standardsImplemented' has been modified:
		Before:
		After:
			Biological Pathway eXchange
			Systems Biology Graphical Notation
			Systems Biology Markup Language
			MDL reaction Format
			Structure Data Format
			FASTA Sequence Format
		Added:
			Biological Pathway eXchange
			Systems Biology Graphical Notation
			Systems Biology Markup Language
			MDL reaction Format
			Structure Data Format
			FASTA Sequence Format
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'The FAIRsharing Team' at 11:55, 25 Sep 2019 (approved):

	'organizations' has been modified:
		Before:
			University of Alberta, Canada|https://www.ualberta.ca/|Undefined
		After:
			University of Alberta, Canada|https://www.ualberta.ca/|Maintains
		Added:
			University of Alberta, Canada|https://www.ualberta.ca/|Maintains
		Removed:
			University of Alberta, Canada|https://www.ualberta.ca/|Undefined

	'supportLinks' has been modified:
		Before:
		After:
			help|http://pathbank.org/pathwhiz/style_guide
			help|http://pathbank.org/legend
			online documentation|http://pathbank.org/stats
			online documentation|http://pathbank.org/about
		Added:
			help|http://pathbank.org/pathwhiz/style_guide
			help|http://pathbank.org/legend
			online documentation|http://pathbank.org/stats
			online documentation|http://pathbank.org/about
		Removed:

	'description' has been modified:
		Before: PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. It is able to do so, in part, by providing detailed, fully searchable, hyperlinked diagrams of metabolic, signalling, disease, drug, and physiological pathways. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. Each small molecule is hyperlinked to detailed descriptions contained in the HMDB or DrugBank and each protein complex or enzyme complex is hyperlinked to UniProt. All PathBank pathways are accompanied with detailed descriptions and references, providing an overview of the pathway, condition, or processes depicted in each diagram. The database is easily browsed and supports full text, sequence, and chemical structure searching. Users may query PathBank with lists of metabolite names, drug names, genes/protein complex names, SwissProt IDs, GenBank IDs, Affymetrix IDs, or Agilent microarray IDs. These queries will produce lists of matching pathways and highlight the matching molecules on each of the pathway diagrams. Gene, metabolite, and protein complex concentration data can also be visualized through PathBank's mapping interface. Each of PathBank's images, descriptions, and tables are downloadable in several formats. PathBank is made available under the Open Database License. 
		After: PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.

	'onto_disciplines' has been modified:
		Before:
			Animal Genetics
			Bioinformatics
			Biology
			Cell Biology
			Cheminformatics
			Database Management
			Drug Metabolism
			Endocrinology, Diabetology
			Genetics
			Human Genetics
			Medical Informatics
			Metabolism, Biochemistry and Genetics of Microorganisms
			Metabolomics
			Microbiology
			Molecular biology
			Plant Genetics
			Proteomics
		After:
			Animal Genetics
			Bioinformatics
			Biology
			Cell Biology
			Cheminformatics
			Database Management
			Drug Metabolism
			Endocrinology, Diabetology
			Genetics
			Human Genetics
			Medical Informatics
			Metabolism, Biochemistry and Genetics of Microorganisms
			Metabolomics
			Microbiology
			Molecular biology
			Plant Genetics
			Proteomics
			Systems biology
			Transcriptomics
		Added:
			Systems biology
			Transcriptomics
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			Browse Pathways
			Table of Primary Pathways
			Browse by Compound
			Browse by Protein
			Text Search
			Path-MAP Advanced Search
			Search by Structure
			Search by Molecular Weight
			Sequence Search
			Download
		Added:
			Browse Pathways
			Table of Primary Pathways
			Browse by Compound
			Browse by Protein
			Text Search
			Path-MAP Advanced Search
			Search by Structure
			Search by Molecular Weight
			Sequence Search
			Download
		Removed:

	'onto_domains' has been modified:
		Before:
			Drug Interaction
			Drug name
			Enzymes
			Gene name
			Protein interactions
			Protein name
			Protein sequence
			Protein-Protein Interaction
			Reaction data
			Receptor
			catalytic activity
			disease
			drug
			drug metabolic process
			enzymatic reaction
			enzyme
			gene
			genetic disorder
			glucose metabolic process
			metabolite
			protein
			regulation of gene expression
			signaling
		After:
			Drug Interaction
			Drug name
			Enzymes
			Gene name
			Protein interactions
			Protein name
			Protein sequence
			Protein structure
			Protein-Protein Interaction
			Reaction data
			Receptor
			catalytic activity
			disease
			drug
			drug metabolic process
			enzymatic reaction
			enzyme
			gene
			genetic disorder
			glucose metabolic process
			metabolite
			protein
			regulation of gene expression
			signaling
		Added:
			Protein structure
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'dwishart' at 20:06, 24 Sep 2019 (approved):

	'organizations' has been modified:
		Before:
		After:
			University of Alberta, Canada|https://www.ualberta.ca/|Undefined
		Added:
			University of Alberta, Canada|https://www.ualberta.ca/|Undefined
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'dwishart' at 20:05, 24 Sep 2019 (approved):

	'licences' has been modified:
		Before:
		After:
			Open Data Commons Open Database License (ODC ODbL)|http://opendatacommons.org/licenses/odbl/1.0/|Data
		Added:
			Open Data Commons Open Database License (ODC ODbL)|http://opendatacommons.org/licenses/odbl/1.0/|Data
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'dwishart' at 20:03, 24 Sep 2019 (approved):

	'user_defined_tags' has been modified:
		Before:
		After:
			Drug Target
			Pathway
			Pathway Diagram
		Added:
			Drug Target
			Pathway
			Pathway Diagram
		Removed:

	'onto_disciplines' has been modified:
		Before:
		After:
			Animal Genetics
			Bioinformatics
			Biology
			Cell Biology
			Cheminformatics
			Database Management
			Drug Metabolism
			Endocrinology, Diabetology
			Genetics
			Human Genetics
			Medical Informatics
			Metabolism, Biochemistry and Genetics of Microorganisms
			Metabolomics
			Microbiology
			Molecular biology
			Plant Genetics
			Proteomics
		Added:
			Animal Genetics
			Bioinformatics
			Biology
			Cell Biology
			Cheminformatics
			Database Management
			Drug Metabolism
			Endocrinology, Diabetology
			Genetics
			Human Genetics
			Medical Informatics
			Metabolism, Biochemistry and Genetics of Microorganisms
			Metabolomics
			Microbiology
			Molecular biology
			Plant Genetics
			Proteomics
		Removed:

	'onto_domains' has been modified:
		Before:
		After:
			Drug Interaction
			Drug name
			Enzymes
			Gene name
			Protein interactions
			Protein name
			Protein sequence
			Protein-Protein Interaction
			Reaction data
			Receptor
			catalytic activity
			disease
			drug
			drug metabolic process
			enzymatic reaction
			enzyme
			gene
			genetic disorder
			glucose metabolic process
			metabolite
			protein
			regulation of gene expression
			signaling
		Added:
			Drug Interaction
			Drug name
			Enzymes
			Gene name
			Protein interactions
			Protein name
			Protein sequence
			Protein-Protein Interaction
			Reaction data
			Receptor
			catalytic activity
			disease
			drug
			drug metabolic process
			enzymatic reaction
			enzyme
			gene
			genetic disorder
			glucose metabolic process
			metabolite
			protein
			regulation of gene expression
			signaling
		Removed:

            

Edits to 'https://fairsharing.org/FAIRsharing.3xwMon' by 'dwishart' at 19:21, 24 Sep 2019 (approved):

	'related_databases' has been modified:
		Before:
		After:
			The Yeast Metabolome DataBase
			DrugBank
			UniProt Knowledgebase
			The Human Metabolome Database
		Added:
			The Yeast Metabolome DataBase
			DrugBank
			UniProt Knowledgebase
			The Human Metabolome Database
		Removed:

	'taxonomies' has been modified:
		Before:
		After:
			Arabidopsis thaliana
			Bos taurus
			Caenorhabditis elegans
			Drosophila melanogaster
			Escherichia coli
			Homo sapiens
			Mus musculus
			Pseudomonas aeruginosa
			Rattus norvegicus
			Saccharomyces cerevisiae
		Added:
			Arabidopsis thaliana
			Bos taurus
			Caenorhabditis elegans
			Drosophila melanogaster
			Escherichia coli
			Homo sapiens
			Mus musculus
			Pseudomonas aeruginosa
			Rattus norvegicus
			Saccharomyces cerevisiae
		Removed: