Open Connectome Project

Abbreviation:OCP

Recommended

General Information

This record was deprecated on March 19, 2021 for the following reason(s): This resource is no longer available as a database. Instead, all data are hosted in AWS on the Open NeuroData Registry https://registry.opendata.aws/open-neurodata . (The original homepage at http://openconnecto.me is no longer active.)

Open Connectome Project: Reverse Engineering the Brain One Synapse at a Time

Homepage https://neurodata.io/project/ocp/

Countries that developed this resource United States

Created in 2011

Taxonomic range

Caenorhabditis elegans

Drosophila melanogaster

Pristionchus pacificus

Rattus norvegicus

Rhesus macaques

Subjects

In the following recommendations:

Scientific Data

How to cite this record FAIRsharing.org: OCP; Open Connectome Project; DOI: https://doi.org/10.25504/FAIRsharing.44wk5g; Last edited: May 26, 2021, 1:31 p.m.; Last accessed: Jun 19 2021 4:38 a.m.

This record is maintained by jovo ORCID

Record added: Dec. 18, 2014, 10:53 p.m.
Record updated: May 26, 2021, 1:31 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.44wk5g' by 'The FAIRsharing Team' at 13:31, 26 May 2021 (not approved):

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		After: DEP

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Edits to 'https://fairsharing.org/FAIRsharing.44wk5g' by 'The FAIRsharing Team' at 14:05, 19 Mar 2021 (approved):

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		After: support@neurodata.io

	'contact' has been modified:
		Before: Joshua Vogelstein
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	'supportLinks' has been modified:
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			email|jovo@jhu.edu
			twitter|@openconnectome
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			email|jovo@jhu.edu
			twitter|@openconnectome

	'contactORCID' has been modified:
		Before: 0000-0003-2487-6237
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Edits to 'https://fairsharing.org/FAIRsharing.44wk5g' by 'The FAIRsharing Team' at 14:03, 19 Mar 2021 (approved):

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		After: RDY

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Edits to 'https://fairsharing.org/FAIRsharing.44wk5g' by 'The FAIRsharing Team' at 13:56, 19 Mar 2021 (approved):

	'miriam_id' has been modified:
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Edits to 'https://fairsharing.org/FAIRsharing.44wk5g' by 'The FAIRsharing Team' at 13:54, 19 Mar 2021 (approved):

	'status' has been modified:
		Before: RDY
		After: DEP

	'homepage' has been modified:
		Before: http://openconnecto.me
		After: https://neurodata.io/project/ocp/

Edits to 'https://fairsharing.org/FAIRsharing.44wk5g' by 'The FAIRsharing Team' at 12:02, 19 Mar 2021 (approved):

	'grants' has been modified:
		Before:
			 JHU Whiting School of Engineering (Dean's Award)
			1R01DA036400-01
			1RO1EB016411-01 
			ACI-1261715
			JHU Applied Research Laboratory IRAD
			N66001-14-1-4028
			OCI-1040114
		After:
			1R01DA036400-01
			1RO1EB016411-01 
			ACI-1261715
			JHU Applied Research Laboratory IRAD
			JHU Whiting School of Engineering (Dean's Award)
			N66001-14-1-4028
			OCI-1040114
		Added:
			JHU Whiting School of Engineering (Dean's Award)
		Removed:
			 JHU Whiting School of Engineering (Dean's Award)

Edits to 'https://fairsharing.org/FAIRsharing.44wk5g' by 'The FAIRsharing Team' at 11:03, 24 Feb 2021 (approved):

	'grants' has been modified:
		Before:
			 JHU Whiting School of Engineering, Dean's Award
			1R01DA036400-01
			1RO1EB016411-01 
			ACI-1261715
			JHU Applied Research Laboratory IRAD
			N66001-14-1-4028
			OCI-1040114
		After:
			 JHU Whiting School of Engineering (Dean's Award)
			1R01DA036400-01
			1RO1EB016411-01 
			ACI-1261715
			JHU Applied Research Laboratory IRAD
			N66001-14-1-4028
			OCI-1040114
		Added:
			 JHU Whiting School of Engineering (Dean's Award)
		Removed:
			 JHU Whiting School of Engineering, Dean's Award

	'miriam_id' has been modified:
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	'publications' has been modified:
		Before:
			The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience|Randal Burns, William Gray Roncal, Dean Kleissas, Kunal Lillaney, Priya Manavalan, Eric Perlman, Daniel R. Berger, Davi D. Bock, Kwanghun Chung, Logan Grosenick, Narayanan Kasthuri, Nicholas C. Weiler, Karl Deisseroth, Michael Kazhdan, Jeff Lichtman, R. Clay Reid, Stephen J. Smith, Alexander S. Szalay, Joshua T. Vogelstein, R. Jacob Vogelstein| Scientific and Statistical Database Management|2013
		After:
			The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience|R Burns, W Gray Roncal, D leissas, K Lillaney, P Manavalan, E Perlman, D R. Berger, D D. Bock,  K Chung,L Grosenick, N Kasthuri, N C. Weiler, K Deisseroth, M Kazhdan, J Lichtman, R. C Reid, S J. Smith, A S. Szalay, J T. Vogelstein, R. J Vogelstein| Scientific and Statistical Database Management|2013
		Added:
			The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience|R Burns, W Gray Roncal, D leissas, K Lillaney, P Manavalan, E Perlman, D R. Berger, D D. Bock,  K Chung,L Grosenick, N Kasthuri, N C. Weiler, K Deisseroth, M Kazhdan, J Lichtman, R. C Reid, S J. Smith, A S. Szalay, J T. Vogelstein, R. J Vogelstein| Scientific and Statistical Database Management|2013
		Removed:
			The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience|Randal Burns, William Gray Roncal, Dean Kleissas, Kunal Lillaney, Priya Manavalan, Eric Perlman, Daniel R. Berger, Davi D. Bock, Kwanghun Chung, Logan Grosenick, Narayanan Kasthuri, Nicholas C. Weiler, Karl Deisseroth, Michael Kazhdan, Jeff Lichtman, R. Clay Reid, Stephen J. Smith, Alexander S. Szalay, Joshua T. Vogelstein, R. Jacob Vogelstein| Scientific and Statistical Database Management|2013

In Collections

Open Science Prize

Data Citation Implementation

Support

No support information provided.

Additional Information

Contact

General Contact

Tools

CATMAID	http://catmaid.org/
BigDataViewer	http://fiji.sc/BigDataViewer
GALA	https://github.com/janelia-flyem/gala
MRCAP	http://www.nitrc.org/projects/mrcap
VAST	https://software.rc.fas.harvard.edu/lichtman/vast/
OCP API	http://openconnecto.me/api/

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Open Data Commons Attribution License (ODC-BY)

Applies to: Database software

Creative Commons Attribution-ShareAlike 1.0 Generic (CC BY-SA 1.0)

Data Access

Graph Download	http://openconnecto.me/graph-services/download/
2D Web View	http://openconnecto.me/catmaid/

REST Web Services

REST	http://openconnecto.me

Publications

The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience

R Burns, W Gray Roncal, D leissas, K Lillaney, P Manavalan, E Perlman, D R. Berger, D D. Bock, K Chung,L Grosenick, N Kasthuri, N C. Weiler, K Deisseroth, M Kazhdan, J Lichtman, R. C Reid, S J. Smith, A S. Szalay, J T. Vogelstein, R. J Vogelstein
Scientific and Statistical Database Management 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

Scientific Data Data Policy

Credit

Record Maintainer

This record is maintained by jovo ORCID

Funds

Applied Physics Laboratory, John Hopkins University, Maryland, USA (Lab)
United States Collaborative Research in Computational Neuroscience (CRCNS)
United States Defense Advanced Research Projects Agency (DARPA)
National Science Foundation (NSF), USA (Government body)
John Hopkins University, Baltimore, MD, USA (University)
National Institute on Drug Abuse (NIDA), Bethesda, MD, USA (Government body)

Grant Number(s)

1R01DA036400-01 (National Institute on Drug Abuse (NIDA), Bethesda, MD, USA)
1RO1EB016411-01 (United States Collaborative Research in Computational Neuroscience (CRCNS))
ACI-1261715 (National Science Foundation (NSF), USA)
JHU Applied Research Laboratory IRAD (Applied Physics Laboratory, John Hopkins University, Maryland, USA)
JHU Whiting School of Engineering (Dean's Award) (John Hopkins University, Baltimore, MD, USA)
N66001-14-1-4028 (United States Defense Advanced Research Projects Agency (DARPA))
OCI-1040114 (National Science Foundation (NSF), USA)

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