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The Consensus CDS

Abbreviation:CCDS

General Information

The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of gene annotations.

Homepage http://www.ncbi.nlm.nih.gov/CCDS/

Countries that developed this resource United States

Created in 2005

Taxonomic range

Homo sapiens

Mus musculus

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: CCDS; The Consensus CDS; DOI: https://doi.org/10.25504/FAIRsharing.46s4nt; Last edited: April 26, 2021, 11:49 a.m.; Last accessed: Oct 26 2021 10:49 a.m.

Record updated: April 20, 2021, 1:41 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.46s4nt' by 'The FAIRsharing Team' at 13:41, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Attribution required||Data
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
		After:
			CCDS Attribution required|https://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi|Data
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			NCBI Data Policies and Disclaimer|http://www.ncbi.nlm.nih.gov/home/about/policies.shtml|Data
		Added:
			CCDS Attribution required|https://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi|Data
			NCBI Data Policies and Disclaimer|http://www.ncbi.nlm.nih.gov/home/about/policies.shtml|Data
		Removed:
			Attribution required||Data

Edits to 'https://fairsharing.org/FAIRsharing.46s4nt' by 'The FAIRsharing Team' at 10:57, 16 Apr 2021 (approved):

	'organizations' has been modified:
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			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
			National Center for Biotechnology Information (NCBI), Rockville, MD, USA|http://www.ncbi.nlm.nih.gov/|Maintains
			HUGO Gene Nomenclature Committee (HGNC), Hinxton, Cambridgeshire, UK|http://www.genenames.org/|Maintains
			The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK|http://www.sanger.ac.uk|Maintains
			University of California, Santa Cruz, CA, USA|http://rna.ucsc.edu|Maintains
			Mouse Genome Informatics (MGI)|http://www.informatics.jax.org|Maintains
			National Human Genome Research Institute (NHGRI), Bethesda, MD, USA|http://www.genome.gov/|Funds
		After:
			National Human Genome Research Institute (NHGRI), Bethesda, MD, USA|http://www.genome.gov/|Funds
			National Center for Biotechnology Information (NCBI), Rockville, MD, USA|http://www.ncbi.nlm.nih.gov/|Maintains
			HUGO Gene Nomenclature Committee (HGNC), Hinxton, Cambridgeshire, UK|http://www.genenames.org/|Maintains
			The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK|http://www.sanger.ac.uk|Maintains,Funds
			University of California, Santa Cruz, CA, USA|http://rna.ucsc.edu|Maintains
			Mouse Genome Informatics (MGI)|http://www.informatics.jax.org|Maintains
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
		Added:
			The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK|http://www.sanger.ac.uk|Maintains,Funds
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
		Removed:
			European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
			The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK|http://www.sanger.ac.uk|Maintains

	'miriam_id' has been modified:
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	'publications' has been modified:
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			The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.|Pruitt KD., Harrow J., Harte RA., Wallin C., Diekhans M., Maglott DR., Searle S., Farrell CM., Loveland JE., Ruef BJ., Hart E., Suner MM., Landrum MJ., Aken B., Ayling S., Baertsch R., Fernandez-Banet J., Cherry JL., Curwen V., Dicuccio M., Kellis M., Lee J., Lin MF., Schuster M., Shkeda A., Amid C., Brown G., Dukhanina O., Frankish A., Hart J., Maidak BL., Mudge J., Murphy MR., Murphy T., Rajan J., Rajput B., Riddick LD., Snow C., Steward C., Webb D., Weber JA., Wilming L., Wu W., Birney E., Haussler D., Hubbard T., Ostell J., Durbin R., Lipman D., |Genome Res.|2009
		After:
			The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.|Pruitt KD. et al.|Genome Res.|2009
		Added:
			The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.|Pruitt KD. et al.|Genome Res.|2009
		Removed:
			The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.|Pruitt KD., Harrow J., Harte RA., Wallin C., Diekhans M., Maglott DR., Searle S., Farrell CM., Loveland JE., Ruef BJ., Hart E., Suner MM., Landrum MJ., Aken B., Ayling S., Baertsch R., Fernandez-Banet J., Cherry JL., Curwen V., Dicuccio M., Kellis M., Lee J., Lin MF., Schuster M., Shkeda A., Amid C., Brown G., Dukhanina O., Frankish A., Hart J., Maidak BL., Mudge J., Murphy MR., Murphy T., Rajan J., Rajput B., Riddick LD., Snow C., Steward C., Webb D., Weber JA., Wilming L., Wu W., Birney E., Haussler D., Hubbard T., Ostell J., Durbin R., Lipman D., |Genome Res.|2009

Edits to 'https://fairsharing.org/FAIRsharing.46s4nt' by 'The FAIRsharing Team' at 08:34, 10 Dec 2016 (approved):

	'contactName' has been modified:
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			Kim D. Pruitt
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Support

General

contact form	https://www.ncbi.nlm.nih.gov/projects/CC ...
support email	info@ncbi.nlm.nih.gov

Additional Information

Contact

Kim D. Pruitt

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

download

ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/

Publications

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.

Pruitt KD. et al.
Genome Res. 2009

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Ensembl

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
European Commission under FP7 Grant Agreement (Government body)
The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK (Research institute)

Maintains

National Center for Biotechnology Information (NCBI), Rockville, MD, USA (Government body)
HUGO Gene Nomenclature Committee (HGNC), Hinxton, Cambridgeshire, UK (Consortium)
The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK (Research institute)
University of California, Santa Cruz, CA, USA (University)
Mouse Genome Informatics (MGI) (Consortium)

Grant Number(s)

1U54HG004555-01 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
WT062023 (The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK)
WT077198 (The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK)

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