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Stem Cell Discovery Engine

Abbreviation:SCDE

General Information

This record was deprecated on April 21, 2015 for the following reason(s): This resource is no longer maintained, and its data has now been merged with Stem Cell Commons as stated on the SCDE website (http://discovery.hsci.harvard.edu/).

Comparison system for cancer stem cell analysis

This record is replaced by:

Stem Cell Commons

Homepage http://discovery.hsci.harvard.edu/

Countries that developed this resource United States

Created in 2011

Taxonomic range

Homo sapiens

Mus musculus

Rattus norvegicus

Knowledge Domains

Subjects

User-defined Tags

Raw microarray data

Surface protein markers

How to cite this record FAIRsharing.org: SCDE; Stem Cell Discovery Engine; DOI: https://doi.org/10.25504/FAIRsharing.490xfb; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Oct 27 2021 2:21 a.m.

Record updated: Feb. 8, 2021, 8:07 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.490xfb' by 'The FAIRsharing Team' at 20:07, 08 Feb 2021 (approved):

	'miriam_id' has been modified:
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	'onto_domains' has been modified:
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			ChIP-seq assay
			Citation
			Experiment report
			Model organisms
			cell
			disease
			genotype
			histological assay
			immunoglobulin complex, circulating
			phenotype
			tissue
		After:
			ChIP-seq assay
			Citation
			Model organisms
			cell
			disease
			genotype
			histological assay
			immunoglobulin complex, circulating
			phenotype
			tissue
		Added:
		Removed:
			Experiment report

Edits to 'https://fairsharing.org/FAIRsharing.490xfb' by 'The FAIRsharing Team' at 13:30, 03 Jan 2017 (approved):

	'contactName' has been modified:
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			General Enquiries
		After:
			Philippe Rocca-Serra
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Edits to 'https://fairsharing.org/FAIRsharing.490xfb' by 'The FAIRsharing Team' at 13:00, 21 Dec 2016 (approved):

	'contactName' has been modified:
		Before:
			Philippe Rocca-Serra
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			General Enquiries
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Support

No support information provided.

Additional Information

Contact

Philippe Rocca-Serra ORCID

Tools

Galaxy gene list comparisons

http://discovery.hsci.harvard.edu/galaxy/

Access / Retrieve Data

Conditions of Use

Data Versioning

None	No link recorded

Data Release

continuous release	No link recorded
monthly release [data dumps]	No link recorded

Data Curation

manual curation

No link recorded

Data Access

web interface	No link recorded
file download(tab-delimited)	No link recorded
web service (SOAP)	No link recorded
search	http://stemcellcommons.org/search/all-experiments

Publications

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.

Ho Sui SJ., Begley K., Reilly D., Chapman B., McGovern R., Rocca-Sera P., Maguire E., Altschuler GM., Hansen TA., Sompallae R., Krivtsov A., Shivdasani RA., Armstrong SA., Culhane AC., Correll M., Sansone SA., Hofmann O., Hide W.,
Nucleic Acids Res. 2012

View Paper (PubMed)

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

U.S. National Library of Medicine (Government body)

Maintains

Dana-Farber Cancer Institute, USA (Research institute)

Stem Cell Discovery Engine

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