The Arabidopsis Information Resource

Abbreviation:TAIR

Recommended

General Information

The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.

Homepage http://www.arabidopsis.org/

Developed in United States

Created in 2000

Taxonomic range

Scope and data types

In the following recommendations:

How to cite this record FAIRsharing.org: TAIR; The Arabidopsis Information Resource; DOI: https://doi.org/10.25504/FAIRsharing.4dqw0; Last edited: Feb. 22, 2018, 2:44 p.m.; Last accessed: Oct 20 2018 1:52 p.m.

This record is maintained by taircurator

Record updated: Jan. 30, 2018, 6:32 p.m. by taircurator.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.4dqw0' by 'taircurator' at 18:32, 30 Jan 2018 (approved):

	'publications' has been modified:
		Before:
			The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
			Using the Arabidopsis information resource (TAIR) to find information about Arabidopsis genes.
			The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools.
		After:
			The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
			Using the Arabidopsis information resource (TAIR) to find information about Arabidopsis genes.
			The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools.
			Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes.
			Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model.
			The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome.
		Added:
			Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes.
			Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model.
			The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome.
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.4dqw0' by 'The FAIRsharing Team' at 14:10, 30 Jan 2018 (approved):

	'licences' has been modified:
		Before:
			TAIR terms of use | Data
			TAIR Software License | Data
			GNU Lesser General Public License (GPL) | Data
		After:
			TAIR terms of use | Data
			TAIR Software License | Software
			GNU Lesser General Public License (GPL) | Software
		Added:
			TAIR Software License | Software
			GNU Lesser General Public License (GPL) | Software
		Removed:
			TAIR Software License | Data
			GNU Lesser General Public License (GPL) | Data

Edits to 'https://fairsharing.org/FAIRsharing.4dqw0' by 'The FAIRsharing Team' at 14:06, 30 Jan 2018 (approved):

	'miriam_url' has been modified:
		Before: None
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Edits to 'https://fairsharing.org/FAIRsharing.4dqw0' by 'taircurator' at 20:55, 01 Nov 2017 (approved):

	'accessPoints' has been modified:
		Before:
			SOAP|http://www.biocatalogue.org/soap_operations/9491
			SOAP|http://www.biocatalogue.org/soap_operations/9490
			SOAP|http://www.biocatalogue.org/soap_operations/9489
			SOAP|http://www.biocatalogue.org/soap_operations/9488
			SOAP|http://www.biocatalogue.org/soap_operations/9486
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		Added:
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			SOAP|http://www.biocatalogue.org/soap_operations/9491
			SOAP|http://www.biocatalogue.org/soap_operations/9490
			SOAP|http://www.biocatalogue.org/soap_operations/9489
			SOAP|http://www.biocatalogue.org/soap_operations/9488
			SOAP|http://www.biocatalogue.org/soap_operations/9486

Edits to 'https://fairsharing.org/FAIRsharing.4dqw0' by 'taircurator' at 20:39, 01 Nov 2017 (approved):

	'supportLinks' has been modified:
		Before:
			http://www.arabidopsis.org/help/faq.jsp
			abrc@osu.edu
			http://www.arabidopsis.org/help/index.jsp
			http://www.arabidopsis.org/help/tutorials/index.jsp
			https://en.wikipedia.org/wiki/The_Arabidopsis_Information_Resource
		After:
			http://www.arabidopsis.org/help/faq.jsp
			curator@arabidopsis.org
			http://www.arabidopsis.org/help/index.jsp
			http://www.arabidopsis.org/help/tutorials/index.jsp
			https://en.wikipedia.org/wiki/The_Arabidopsis_Information_Resource
			https://www.youtube.com/user/TAIRinfo/featured
		Added:
			curator@arabidopsis.org
			https://www.youtube.com/user/TAIRinfo/featured
		Removed:
			abrc@osu.edu

In Collections

AgBioData

Support

General

FAQ	http://www.arabidopsis.org/help/faq.jsp
support email	curator@arabidopsis.org
help	http://www.arabidopsis.org/help/index.js ...
training	http://www.arabidopsis.org/help/tutorial ...
training	TAIR You Tube Channel
wikipedia	https://en.wikipedia.org/wiki/The_Arabid ...

Additional Information

Contact

curator@arabidopsis.org

Tools

Synteny viewer: compare syntenic regions between two or more genomes	https://www.arabidopsis.org/servlets/tools/synteny
SeqViewer: a genome browser developed at TAIR for viewing Arabidopsis sequence and annotation	https://www.arabidopsis.org/servlets/tools/sv
NBrowse: an interactive graphical browser for biological networks such as protein-protein interactions	https://www.arabidopsis.org/tools/nbrowse.jsp
AraCyc Pathways: Arabidopsis biochemical pathways visualization and querying tool	https://www.arabidopsis.org/biocyc/index.jsp
Textpresso Full Text: literature full text search	http://www.textpresso.org/arabidopsis/
analyze	http://www.arabidopsis.org/tools/index.jsp

Access / Retrieve Data

Conditions of Use

Applies to: Data use

TAIR Terms of Use

Applies to: Database software

Data Versioning

versioning by genome assembly	No link recorded
versioning by data of functional annotation	No link recorded
access to historical files possible	http://www.arabidopsis.org/download/index-auto.jsp?dir=/download_files ...

Data Release

weekly release of gene function annotation

http://arabidopsis.org

Data Curation

submit	http://www.arabidopsis.org/submit/index.jsp
manual curation	No link recorded

Data Access

Gbrowse	https://www.arabidopsis.org/servlets/tools/gbrowse/arabidopsis
GO Annotation Search: search GO annotations	https://www.arabidopsis.org/servlets/Search?action=new_search&type=key ...

Publications

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

Swarbreck D., Wilks C., Lamesch P., Berardini TZ., Garcia-Hernandez M., Foerster H., Li D., Meyer T., Muller R., Ploetz L., Radenbaugh A., Singh S., Swing V., Tissier C., Zhang P., Huala E.,
Nucleic Acids Res. 2008