The Arabidopsis Information Resource
Abbreviation:TAIR
Homepage http://www.arabidopsis.org/
Countries that developed this resource United States
Created in 2000
Taxonomic range
Knowledge Domains
Subjects
In the following recommendations:
How to cite this record FAIRsharing.org: TAIR; The Arabidopsis Information Resource; DOI: https://doi.org/10.25504/FAIRsharing.4dqw0; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Oct 16 2019 11:17 p.m.
Record updated: Jan. 30, 2018, 6:32 p.m. by taircurator.
| FAQ | http://www.arabidopsis.org/help/faq.jsp |
| support email | curator@arabidopsis.org |
| help | http://www.arabidopsis.org/help/index.js ... |
| training | http://www.arabidopsis.org/help/tutorial ... |
| training | TAIR You Tube Channel |
| wikipedia | https://en.wikipedia.org/wiki/The_Arabid ... |
Additional Information
| Contact | curator@arabidopsis.org |
| Synteny viewer: compare syntenic regions between two or more genomes | https://www.arabidopsis.org/servlets/tools/synteny |
| SeqViewer: a genome browser developed at TAIR for viewing Arabidopsis sequence and annotation | https://www.arabidopsis.org/servlets/tools/sv |
| NBrowse: an interactive graphical browser for biological networks such as protein-protein interactions | https://www.arabidopsis.org/tools/nbrowse.jsp |
| AraCyc Pathways: Arabidopsis biochemical pathways visualization and querying tool | https://www.arabidopsis.org/biocyc/index.jsp |
| Textpresso Full Text: literature full text search | http://www.textpresso.org/arabidopsis/ |
| analyze | http://www.arabidopsis.org/tools/index.jsp |
Conditions of Use
Applies to: Data use Applies to: Database softwareData Versioning
| versioning by genome assembly | No link recorded |
| versioning by data of functional annotation | No link recorded |
| access to historical files possible | http://www.arabidopsis.org/download/index-auto.jsp?dir=/download_files ... |
Data Release
| weekly release of gene function annotation | http://arabidopsis.org |
Data Curation
| submit | http://www.arabidopsis.org/submit/index.jsp |
| manual curation | No link recorded |
Data Access
| Gbrowse | https://www.arabidopsis.org/servlets/tools/gbrowse/arabidopsis |
| GO Annotation Search: search GO annotations | https://www.arabidopsis.org/servlets/Search?action=new_search&type=key ... |
The Arabidopsis Information Resource (TAIR): gene structure and function annotation.
Swarbreck D., Wilks C., Lamesch P., Berardini TZ., Garcia-Hernandez M., Foerster H., Li D., Meyer T., Muller R., Ploetz L., Radenbaugh A., Singh S., Swing V., Tissier C., Zhang P., Huala E.,
Nucleic Acids Res. 2008
Using the Arabidopsis information resource (TAIR) to find information about Arabidopsis genes.
Lamesch P., Dreher K., Swarbreck D., Sasidharan R., Reiser L., Huala E.,
Curr Protoc Bioinformatics 2010
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools.
Lamesch P,Berardini TZ,Li D,Swarbreck D,Wilks C,Sasidharan R,Muller R,Dreher K,Alexander DL,Garcia-Hernandez M,Karthikeyan AS,Lee CH,Nelson WD,Ploetz L,Singh S,Wensel A,Huala E
Nucleic Acids Res 2011
Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes.
Reiser L,Subramaniam S,Li D,Huala E
Curr Protoc Bioinformatics 2017
Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model.
Reiser L,Berardini TZ,Li D,Muller R,Strait EM,Li Q,Mezheritsky Y,Vetushko A,Huala E
Database (Oxford) 2016
The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome.
Berardini TZ,Reiser L,Li D,Mezheritsky Y,Muller R,Strait E,Huala E
Genesis 2015
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Record Maintainer
This record is maintained by taircurator
Maintains
Phoenix Bioinformatics Corporation (Company)
