FAIRsharing is now available for record creation, update, and search at https://beta.fairsharing.org, please visit us there! This read-only version of the legacy site will be replaced with the new version of FAIRsharing in the coming weeks.

Just Enough Results Model Ontology

Abbreviation: JERM

General Information

The JERM provides a framework to describe SEEK assets and the relationships between assets and the experiments that created them. All assets are related to the scientists that created them and the projects they originate from, so the model captures provenance information as well as physical links between assets. JERM definitions for each type of data in SEEK is different, but highly overlapping and they comply with existing minimal information guidelines where they are available.

Homepage https://jermontology.org/

Countries that developed this resource Germany , Netherlands , United Kingdom

Created in 2008

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: JERM; Just Enough Results Model Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4gwycd; Last edited: Feb. 8, 2021, 1:22 p.m.; Last accessed: Oct 20 2021 2:04 a.m.

Record updated: Feb. 8, 2021, 11:30 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.4gwycd' by 'The FAIRsharing Team' at 11:30, 08 Feb 2021 (approved):

	'supportLinks' has been modified:
		Before:
			contact form|https://fair-dom.org/about-fairdom/contact-us/
			email|stuart.owen@manchester.ac.uk
			email|olga.krebs@h-its.org
			forum|https://github.com/FAIRdom/JERMOntology/issues
			online documentation|https://github.com/FAIRdom/JERMOntology
		After:
			contact form|https://fair-dom.org/contact
			email|stuart.owen@manchester.ac.uk
			email|olga.krebs@h-its.org
			forum|https://github.com/FAIRdom/JERMOntology/issues
			online documentation|https://github.com/FAIRdom/JERMOntology
		Added:
			contact form|https://fair-dom.org/contact
		Removed:
			contact form|https://fair-dom.org/about-fairdom/contact-us/

	'description' has been modified:
		Before: The JERM provides a framework to describe SEEK assets and the relationships between assets and the experiments that created them. Crucially, all assets are related to the scientists that created them and the projects they originate from, so the model captures provenance information as well as physical links between assets. JERM definitions for each type of data in SEEK is different, but highly overlapping and they comply with existing minimal information guidelines where they are available.
		After: The JERM provides a framework to describe SEEK assets and the relationships between assets and the experiments that created them. All assets are related to the scientists that created them and the projects they originate from, so the model captures provenance information as well as physical links between assets. JERM definitions for each type of data in SEEK is different, but highly overlapping and they comply with existing minimal information guidelines where they are available.

	'licences' has been modified:
		Before:
		After:
			BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data
		Added:
			BSD-3-Clause License (Modified BSD License) (New BSD License)|https://opensource.org/licenses/BSD-3-Clause|Data
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			Download OWL, data release, https://github.com/FAIRdom/JERMOntology/blob/master/JERM.owl
		Added:
			Download OWL, data release, https://github.com/FAIRdom/JERMOntology/blob/master/JERM.owl
		Removed:

	'related_standards' has been modified:
		Before:
		After:
			Web Ontology Language
		Added:
			Web Ontology Language
		Removed:

	'onto_domains' has been modified:
		Before:
			Biospecimen
			Experiment report
			assay
			protocol
		After:
			Biospecimen
			Experimental measurement
			assay
			protocol
		Added:
			Experimental measurement
		Removed:
			Experiment report

Edits to 'https://fairsharing.org/FAIRsharing.4gwycd' by 'The FAIRsharing Team' at 18:41, 04 May 2019 (approved):

	'miriam_id' has been modified:
		Before: None
		After: 

	'supportLinks' has been modified:
		Before:
			FAQ|http://seek4science.org/faq
			online documentation|http://seek4science.org/presentations
		After:
			contact form|https://fair-dom.org/about-fairdom/contact-us/
			email|stuart.owen@manchester.ac.uk
			email|olga.krebs@h-its.org
			forum|https://github.com/FAIRdom/JERMOntology/issues
			online documentation|https://github.com/FAIRdom/JERMOntology
		Added:
			contact form|https://fair-dom.org/about-fairdom/contact-us/
			email|stuart.owen@manchester.ac.uk
			email|olga.krebs@h-its.org
			forum|https://github.com/FAIRdom/JERMOntology/issues
			online documentation|https://github.com/FAIRdom/JERMOntology
		Removed:
			FAQ|http://seek4science.org/faq
			online documentation|http://seek4science.org/presentations

	'homepage' has been modified:
		Before: http://seek4science.org/jerm
		After: https://jermontology.org/

	'onto_disciplines' has been modified:
		Before:
			Life Sciences
		After:
			Life Sciences
			Ontology and Terminology
		Added:
			Ontology and Terminology
		Removed:

	'onto_domains' has been modified:
		Before:
			Experiment report
		After:
			Biospecimen
			Experiment report
			assay
			protocol
		Added:
			Biospecimen
			assay
			protocol
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.4gwycd' by 'The FAIRsharing Team' at 18:42, 01 Nov 2016 (approved):

	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-1279-5133 Countries have changed:  Previous values: Germany United Kingdom New values:  Germany United Kingdom Netherlands Organisations have changed:  Previous values: HITS gGmbH University of Manchester|UK New values:  HITS gGmbH University of Manchester|UK University of Manchester|UK University of Leiden|Netherlands Heidelberg Institute for Theoretical Studies|Germany Biotechnology and Biological Sciences Research Council (BBSRC)|UK Federal Ministry of Education and Research (BMBF)|Germany Support links have changed:  Previous values: New values:  http://seek4science.org/faq http://seek4science.org/presentations

In Collections

FAIRDOM Community Standards

Support

General

contact form	Contact
support email	Stuart Owen
support email	Olga Krebs
forum	GitHub Issue
online documentation	GitHub Project

Additional Information

Contact

Katy Wolstencroft ORCID

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/JERM

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

BSD-3-Clause License (Modified BSD License) (New BSD License)

Data Release

Download OWL

https://github.com/FAIRdom/JERMOntology/blob/master/JERM.owl

Publications

No publications available

JERM Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Web Ontology Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (1)

FAIRDOMHub
The FAIRDOMHub is a publicly available resource build using the SEEK software, which enables collaborations within the scientific community. FAIRDOM will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Bundesministerium fur Bildung und Forschung (Government body)

Maintains

University of Leiden, Netherlands (University)
University of Manchester, UK (University)
Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany (Government body)

Just Enough Results Model Ontology

We need your help!

Developed by

Contact Us

About FAIRsharing