dictyBase

General Information

dictyBase is a single-access database for the complete genome sequence and expression data of four Dictyostelid species providing information on research, genome and annotations. There is also a repository of plasmids and strains held at the Dicty Stock Centre. Relevant literature is integrated into the database, and gene models and functional annotation are manually curated from experimental results and comparative multigenome analyses.

Homepage http://www.dictybase.org

Developed in United States

Created in 2002

Taxonomic range

Dictyostelium discoideum

Dictyostelium fasciculatum

Dictyostelium purpureum

Polysphondylium pallidum

Knowledge Domains BETA

Subjects BETA

How to cite this record FAIRsharing.org: dictyBase; dictyBase; DOI: https://doi.org/10.25504/FAIRsharing.4shj9c; Last edited: Jan. 8, 2019, 1:22 p.m.; Last accessed: Jan 23 2019 10:54 p.m.

Record added: April 26, 2016, 2:27 p.m.
Record updated: Feb. 20, 2018, 10:25 a.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/FAIRsharing.4shj9c' by 'The FAIRsharing Team' at 10:00, 20 Feb 2018 (approved):

	'description' has been modified:
		Before: A single-access database for the genome of four Dictyostelid species providing information on research, genome and annotations. There is also a repository of plasmids and strains held at the Dicty Stock Centre.
		After: dictyBase is a single-access database for the complete genome sequence and expression data of four Dictyostelid species providing information on research, genome and annotations. There is also a repository of plasmids and strains held at the Dicty Stock Centre. Relevant literature is integrated into the database, and gene models and functional annotation are manually curated from experimental results and comparative multigenome analyses.

Edits to 'https://fairsharing.org/FAIRsharing.4shj9c' by 'The FAIRsharing Team' at 20:42, 08 Feb 2018 (approved):

	'countries' has been modified:
		Before:
			Worldwide
		After:
			United States
		Added:
			United States
		Removed:
			Worldwide

Edits to 'https://fairsharing.org/FAIRsharing.4shj9c' by 'The FAIRsharing Team' at 20:35, 08 Feb 2018 (approved):

	'miriam_url' has been modified:
		Before: None
		After:

Support

General

contact form	Suggestion and Contact Form
help	dictyBase Help
online documentation	About dictyBase
training	Tutorial

Additional Information

Contact

dictyBase Helpdesk

Tools

JBrowse	http://dictybase.org/tools/jbrowse/	1.11.6
Genome Browser	http://dictybase.org/browser/gbrowse/discoideum/?name=1:1..30000
BLAST	http://dictybase.org/tools/blast

Access / Retrieve Data

Conditions of Use

Data Access

Data download

http://dictybase.org/Downloads/

Publications

One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012.

Fey P,Dodson RJ,Basu S,Chisholm RL
Methods Mol Biol 2013

View Paper (PubMed) View Publication

DictyBase 2013: integrating multiple Dictyostelid species.

Basu S,Fey P,Pandit Y,Dodson R,Kibbe WA,Chisholm RL
Nucleic Acids Res 2012

View Paper (PubMed) View Publication

dictyBase: a new Dictyostelium discoideum genome database.

Kreppel L,Fey P,Gaudet P,Just E,Kibbe WA,Chisholm RL,Kimmel AR
Nucleic Acids Res 2003

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

GenBank Sequence Format

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)

Maintains

Generic Model Organisms Database (GMOD) (Consortium)
Genetic Ontology Consortium (Consortium)
Northwestern University, Chicago, IL, USA

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