Fission Yeast Phenotype Ontology
Abbreviation: FYPO
Homepage http://sourceforge.net/apps/trac/pombase/wiki/FissionYeastPhenotypeOntology
Countries that developed this resource United Kingdom
Created in 2012
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: FYPO; Fission Yeast Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4vr0ys; Last edited: Aug. 13, 2019, 4:31 p.m.; Last accessed: Jan 27 2020 9:56 p.m.
Record updated: July 8, 2019, 11:18 a.m. by The FAIRsharing Team.
| support email | General Enquiries |
| online documentation | http://www.pombase.org/browse-curation/f ... |
| online documentation | https://curation.pombase.org/pombase-tra ... |
Additional Information
| Contact | Midori Harris ORCID |
External Links
| Bioportal | http://bioportal.bioontology.org/ontologies/FYPO |
| OBO | http://obofoundry.org/ontology/fypo.html |
No XSD schemas defined
FYPO: the fission yeast phenotype ontology.
Harris MA,Lock A,Bahler J,Oliver SG,Wood V
Bioinformatics 2013
View in BioPortal.
View in OBO Foundry.
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.
SYSGRO: A resource of fission yeast phenotypic data & analysis
SYSGRO is a high throughput/high-content microscopy fission yeast phenotype database from the Carazo Salas Lab in the University of Cambridge UK, funded thanks to a EU ERC Starting Grant. It contains cell shape, microtubule & cell cycle progression computational phenotypes for 3004 non-essential gene knockout cell lines. It is the first multi-phenotypic microscopy profiling functional genomics resource for any organism/
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.
Cyclebase
Cyclebase is a database to visualize and download results from genome-wide cell-cycle-related experiments. In addition to genome annotation, Cyclebase also provides mRNA data, protein expression data, and integrated cell-cycle phenotype information from high-content screens and model organism databases.
This record is not implemented by any policy.
Record Maintainer
This record is maintained by PomBase
Funds
The Wellcome Trust, UK (Charitable foundation)
Maintains
Pombase (Consortium)
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK (Research institute)
Grant Number(s)
WT090548MA (The Wellcome Trust, UK)
