standards > terminology artifact > DOI:10.25504/FAIRsharing.4vr0ys


ready Fission Yeast Phenotype Ontology

Abbreviation: FYPO


General Information
FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource (www.pombase.org). Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions.

Homepage http://sourceforge.net/apps/trac/pombase/wiki/FissionYeastPhenotypeOntology

Developed in United Kingdom

Created in 2012




How to cite this record FAIRsharing.org: FYPO; Fission Yeast Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4vr0ys; Last edited: Jan. 8, 2019, 1:31 p.m.; Last accessed: Mar 22 2019 6:04 p.m.


This record is maintained by PomBase

Record updated: Dec. 1, 2016, 1:52 p.m. by The FAIRsharing Team.

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In Collections
Cell Migration Standardisation Organisation
OBO Foundry


Support

General

online documentation http://www.pombase.org/browse-curation/f ...
online documentation https://curation.pombase.org/pombase-tra ...

Additional Information

Contact General Enquiries

External Links

OBO http://obofoundry.org/ontology/fypo.html

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use




Publications

FYPO: the fission yeast phenotype ontology.

Harris MA,Lock A,Bahler J,Oliver SG,Wood V
Bioinformatics 2013

View Paper (PubMed) View Publication

FYPO Ontology Display

View in OBO Foundry.



Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Implementing Databases (3)
PomBase
PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.
SYSGRO: A resource of fission yeast phenotypic data & analysis
SYSGRO is a high throughput/high-content microscopy fission yeast phenotype database from the Carazo Salas Lab in the University of Cambridge UK, funded thanks to a EU ERC Starting Grant. It contains cell shape, microtubule & cell cycle progression computational phenotypes for 3004 non-essential gene knockout cell lines. It is the first multi-phenotypic microscopy profiling functional genomics resource for any organism/
OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is maintained by PomBase

Maintains