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Fission Yeast Phenotype Ontology

Abbreviation: FYPO

General Information

FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource (www.pombase.org). Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions.

Homepage http://sourceforge.net/apps/trac/pombase/wiki/FissionYeastPhenotypeOntology

Countries that developed this resource United Kingdom

Created in 2012

Taxonomic range

Schizosaccharomyces pombe

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: FYPO; Fission Yeast Phenotype Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4vr0ys; Last edited: Aug. 13, 2019, 4:31 p.m.; Last accessed: Apr 10 2020 9:55 a.m.

This record is maintained by PomBase

Record updated: July 8, 2019, 11:18 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.4vr0ys' by 'The FAIRsharing Team' at 11:18, 08 Jul 2019 (approved):

	'organizations' has been modified:
		Before:
			Pombase|http://www.pombase.org/|Maintains
			The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK|http://www.sanger.ac.uk|Maintains
		After:
			Pombase|http://www.pombase.org/|Maintains
			The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK|http://www.sanger.ac.uk|Maintains
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		Added:
			The Wellcome Trust, UK|https://wellcome.ac.uk/|Funds
		Removed:

	'supportLinks' has been modified:
		Before:
			online documentation|http://www.pombase.org/browse-curation/fission-yeast-phenotype-ontology
			online documentation|https://curation.pombase.org/pombase-trac/wiki/FissionYeastPhenotypeOntology
		After:
			email|helpdesk@pombase.org
			online documentation|http://www.pombase.org/browse-curation/fission-yeast-phenotype-ontology
			online documentation|https://curation.pombase.org/pombase-trac/wiki/FissionYeastPhenotypeOntology
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			email|helpdesk@pombase.org
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	'contactORCID' has been modified:
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		After: 0000-0003-4148-4606	

	'onto_disciplines' has been modified:
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			Genetics
			Life Sciences
			Phylogenetics
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			Genetics
			Life Sciences
			Ontology and Terminology
			Phylogenetics
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			Ontology and Terminology
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	'contact' has been modified:
		Before: General Enquiries
		After: Midori Harris

	'contactEmail' has been modified:
		Before: helpdesk@pombase.org
		After: mah79@cam.ac.uk

	'grants' has been modified:
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			WT090548MA
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			WT090548MA
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Edits to 'https://fairsharing.org/FAIRsharing.4vr0ys' by 'The FAIRsharing Team' at 10:53, 08 Jul 2019 (approved):

	'miriam_id' has been modified:
		Before: None
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Edits to 'https://fairsharing.org/FAIRsharing.4vr0ys' by 'The FAIRsharing Team' at 19:54, 24 Oct 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			General Enquiries
			Domain list has changed: 
			Previous values:
			Life Science|domain|
			Phenotype|information content entity|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2087
			New values: 
			Phenotype|information content entity|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2087
			Life Science|domain|
			Gene Ontology annotation|x|
			Genetics|process|http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Scientific-Discipline.owl#nlx_inv_100628
			Phylogenetics|property|
			Organisations have changed: 
			Previous values:
			Pombase
			New values: 
			Pombase
			The Wellcome Trust Sanger Institute
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In Collections

Cell Migration Standardisation Organisation

Support

General

support email	General Enquiries
online documentation	http://www.pombase.org/browse-curation/f ...
online documentation	https://curation.pombase.org/pombase-tra ...

Additional Information

Contact

Midori Harris ORCID

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/FYPO
OBO	http://obofoundry.org/ontology/fypo.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 3.0 Unported (CC BY 3.0)

Publications

FYPO: the fission yeast phenotype ontology.

Harris MA,Lock A,Bahler J,Oliver SG,Wood V
Bioinformatics 2013

View Paper (PubMed) View Publication

FYPO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (4)

PomBase
PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.

SYSGRO: A resource of fission yeast phenotypic data & analysis
SYSGRO is a high throughput/high-content microscopy fission yeast phenotype database from the Carazo Salas Lab in the University of Cambridge UK, funded thanks to a EU ERC Starting Grant. It contains cell shape, microtubule & cell cycle progression computational phenotypes for 3004 non-essential gene knockout cell lines. It is the first multi-phenotypic microscopy profiling functional genomics resource for any organism/

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Cyclebase
Cyclebase is a database to visualize and download results from genome-wide cell-cycle-related experiments. In addition to genome annotation, Cyclebase also provides mRNA data, protein expression data, and integrated cell-cycle phenotype information from high-content screens and model organism databases.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by PomBase

Funds

The Wellcome Trust, UK (Charitable foundation)

Maintains

Pombase (Consortium)
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK (Research institute)

Grant Number(s)

WT090548MA (The Wellcome Trust, UK)

Fission Yeast Phenotype Ontology

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