Update in progress: note to all users. FAIRsharing is always available for you to search and discover databases, standards and data policies. However, for producers of these resources who maintain or wish to add new records, please note that editing is disabled until September while we migrate our data to our new, improved system. Read our blog post or get in touch with us for more details.

21/09/21 Ongoing Network Maintenance: From the 21st of September FAIRsharing may be offline at various point during the day; we apologise for any inconvenience.

Medaka Fish Ontology

Abbreviation: MFO

General Information

This record was deprecated on Oct. 2, 2018 for the following reason(s): As confirmed via the OBO Foundry entry for MFO.

A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.

This record is replaced by:

Medaka Stage Ontology

Homepage http://www.obofoundry.org/ontology/mfo.html

Countries that developed this resource Germany

Created in 2011

Taxonomic range

Oryzias latipes

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: MFO; Medaka Fish Ontology; DOI: https://doi.org/10.25504/FAIRsharing.5403x; Last edited: July 9, 2019, 10:29 a.m.; Last accessed: Sep 27 2021 5:33 a.m.

Record updated: July 9, 2019, 10:29 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.5403x' by 'The FAIRsharing Team' at 10:29, 09 Jul 2019 (approved):

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.5403x' by 'The FAIRsharing Team' at 15:38, 08 Jul 2019 (approved):

	'onto_disciplines' has been modified:
		Before:
			Anatomy
			Life Sciences
		After:
			Anatomy
			Developmental Biology
			Life Sciences
			Ontology and Terminology
		Added:
			Developmental Biology
			Ontology and Terminology
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'onto_domains' has been modified:
		Before:
		After:
			cell cycle
		Added:
			cell cycle
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.5403x' by 'The FAIRsharing Team' at 19:22, 02 Oct 2018 (approved):

	'status' has been modified:
		Before: RDY
		After: DEP

	'miriam_id' has been modified:
		Before: 
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.5403x' by 'The FAIRsharing Team' at 14:13, 02 Oct 2018 (approved):

	'domains' has been modified:
		Before:
			Anatomy
		After:
			Anatomy
			Life Science
		Added:
			Life Science
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.5403x' by 'The FAIRsharing Team' at 14:13, 02 Oct 2018 (approved):

	'publications' has been modified:
		Before:
			MEPD: a resource for medaka gene expression patterns.||Bioinformatics|2005
		After:
			MEPD: a resource for medaka gene expression patterns.|Henrich T,Ramialison M,Wittbrodt B,Assouline B,Bourrat F,Berger A,Himmelbauer H,Sasaki T,Shimizu N,Westerfield M,Kondoh H,Wittbrodt J|Bioinformatics|2005
		Added:
			MEPD: a resource for medaka gene expression patterns.|Henrich T,Ramialison M,Wittbrodt B,Assouline B,Bourrat F,Berger A,Himmelbauer H,Sasaki T,Shimizu N,Westerfield M,Kondoh H,Wittbrodt J|Bioinformatics|2005
		Removed:
			MEPD: a resource for medaka gene expression patterns.||Bioinformatics|2005

Edits to 'https://fairsharing.org/FAIRsharing.5403x' by 'The FAIRsharing Team' at 14:12, 02 Oct 2018 (approved):

	'description' has been modified:
		Before: "Medaka Fish Ontology" is a standard, specialising in the fields described under "scope and data types", below. Until this entry is claimed, more information on this project can be found at http://purl.bioontology.org/ontology/MFO. This text was generated automatically. If you work on the project responsible for "Medaka Fish Ontology" then please consider helping us  by claiming this record  and updating it appropriately.
		After: A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.

	'countries' has been modified:
		Before:
		After:
			Germany
		Added:
			Germany
		Removed:

	'yearOfCreation' has been modified:
		Before: None
		After: 2011

	'contactEmail' has been modified:
		Before: 
		After: Thorsten.Henrich@embl-heidelberg.de

	'contact' has been modified:
		Before: 
		After: Thorsten Heinrich

	'miriam_id' has been modified:
		Before: None
		After: 

	'homepage' has been modified:
		Before: http://purl.bioontology.org/ontology/MFO
		After: http://www.obofoundry.org/ontology/mfo.html

Support

No support information provided.

Additional Information

Contact

Thorsten Heinrich

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/MFO
OBO	http://obofoundry.org/ontology/mfo.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Publications

MEPD: a resource for medaka gene expression patterns.

Henrich T,Ramialison M,Wittbrodt B,Assouline B,Bourrat F,Berger A,Himmelbauer H,Sasaki T,Shimizu N,Westerfield M,Kondoh H,Wittbrodt J
Bioinformatics 2005

View Paper (PubMed) View Publication

MFO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (2)

Medaka Expression Pattern Database
MEPD contains expression data of genes and regulatory elements assayed in the Japanese killifish Medaka (Oryzias latipes).

OBO Foundry
The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants voluntarily adhere to and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Gene Ontology (GO). The OBO Foundry is overseen by an Operations Committee with Editorial, Technical and Outreach working groups.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is in need of a maintainer. If you login, you'll be able to claim this record.

Medaka Fish Ontology

We need your help!

Developed by

Contact Us

About FAIRsharing