standards > model/format > DOI:10.25504/FAIRsharing.54814g
Update in progress: note to all users. FAIRsharing is always available for you to search and discover databases, standards and data policies. However, for producers of these resources who maintain or wish to add new records, please note that editing is disabled until September while we migrate our data to our new, improved system. Read our blog post or get in touch with us for more details.
21/09/21 Ongoing Network Maintenance: From the 21st of September FAIRsharing may be offline at various point during the day; we apologise for any inconvenience.


ready MDL reaction Format

Abbreviation: RXN


General Information
MDL reaction Format is used to describe the kinetics of chemical reactions and the chemical structure of the reactants and products.

Homepage http://openbabel.org/wiki/Chemical_Kinetics_Formats#RXN_Format

Countries that developed this resource United States

Taxonomic range




How to cite this record FAIRsharing.org: RXN; MDL reaction Format; DOI: https://doi.org/10.25504/FAIRsharing.54814g; Last edited: Jan. 8, 2019, 1:28 p.m.; Last accessed: Sep 25 2021 10:08 p.m.


Record updated: Oct. 22, 2016, 7:30 p.m. by The FAIRsharing Team.

Show edit history



Support

No support information provided.

External Links

Bioportal http://bioportal.bioontology.org/ontologies/RXN
OBO http://obofoundry.org/ontology/rxn.html

Tools

    No tools defined


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use





Publications

No publications available


Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases (2)
Rhea
Rhea is a comprehensive and non-redundant resource of expert-curated chemical and transport reactions of biological interest. Rhea can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analysis. Rhea describes enzyme-catalyzed reactions covering the IUBMB Enzyme Nomenclature list as well as additional reactions, including spontaneously occurring reactions. Rhea is built on ChEBI (Chemical Entities of Biological Interest) ontology of small molecules to describe its reaction participants. Since December 2018, Rhea is the standard for enzyme annotation in UniProt.
PathBank
PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Maintains