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OmicsDB

General Information

OmicsDB offers an integrated platform for studying biological networks in multiple organisms, as well as accessing gene expression data. By expanding the classic single species databases across species, it is possible to leverage the amount of information to an even higher level. Its main goal is to enable researchers to find omics data as well as biological networks (Coexpression, PPI etc). One of the main ideas has been to cover non-model species (Fungal plant pathogens, Sorghum, Cassava etc), to allow researchers in these fields similar oppertunities as researchers in more developed fields (Like Arabidopsis or Yeast).

Homepage http://www.omicsdb.org/

Countries that developed this resource Germany

Created in 2016

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: OmicsDB; OmicsDB; DOI: https://doi.org/10.25504/FAIRsharing.58lHsV; Last edited: April 21, 2021, 8:42 a.m.; Last accessed: Apr 23 2021 12:56 a.m.

This record is maintained by bjoernoest

Record added: Nov. 15, 2018, 2:07 p.m.
Record updated: April 21, 2021, 8:42 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.58lHsV' by 'The FAIRsharing Team' at 08:43, 21 Apr 2021 (not approved):

	'licences' has been modified:
		Before:
			Free for academic use||Data
			OmicsDB Terms of Use|https://www.omicsdb.org/terms|Data
		After:
			OmicsDB Terms of Use|https://www.omicsdb.org/terms|Data
		Added:
		Removed:
			Free for academic use||Data

	'shortname' has been modified:
		Before: OmicsDB.org
		After: OmicsDB

	'name' has been modified:
		Before: OmicsDB.org
		After: OmicsDB

Edits to 'https://fairsharing.org/FAIRsharing.58lHsV' by 'The FAIRsharing Team' at 14:07, 04 Feb 2021 (approved):

	'licences' has been modified:
		Before:
			Free for academic use||Data
		After:
			Free for academic use||Data
			OmicsDB Terms of Use|https://www.omicsdb.org/terms|Data
		Added:
			OmicsDB Terms of Use|https://www.omicsdb.org/terms|Data
		Removed:

	'onto_domains' has been modified:
		Before:
			DNA microarray
			Pathway or network prediction
			Protein interactions
			RNA-seq assay
			coexpression
			molecular_function
		After:
			DNA microarray
			Prediction and recognition
			Protein interactions
			RNA-seq assay
			coexpression
			molecular_function
			network model
		Added:
			Prediction and recognition
			network model
		Removed:
			Pathway or network prediction

Edits to 'https://fairsharing.org/FAIRsharing.58lHsV' by 'bjoernoest' at 12:25, 08 Jan 2021 (approved):

	'yearOfCreation' has been modified:
		Before: None
		After: 2016

	'onto_disciplines' has been modified:
		Before:
			Life Science
			Transcriptomics
		After:
			Functional Genomics
			Life Science
			Transcriptomics
		Added:
			Functional Genomics
		Removed:

	'tools' has been modified:
		Before:
			Heatmap||http://www.omicsdb.org/data/heatmap
		After:
			Network - Plants||https://plants.omicsdb.org/tools/network
			Heatmap - Plants||https://plants.omicsdb.org/tools/heatmap
			GO enrichment - Plants||https://plants.omicsdb.org/tools/enrichment/go
			Sample vs Sample expression - Plants||https://plants.omicsdb.org/tools/view_expressioninfo
		Added:
			Network - Plants||https://plants.omicsdb.org/tools/network
			Heatmap - Plants||https://plants.omicsdb.org/tools/heatmap
			GO enrichment - Plants||https://plants.omicsdb.org/tools/enrichment/go
			Sample vs Sample expression - Plants||https://plants.omicsdb.org/tools/view_expressioninfo
		Removed:
			Heatmap||http://www.omicsdb.org/data/heatmap

	'contactORCID' has been modified:
		Before: 
		After: https://orcid.org/0000-0001-7620-5422

	'onto_domains' has been modified:
		Before:
			DNA microarray
			Protein interactions
			RNA-seq assay
			coexpression
		After:
			DNA microarray
			Pathway or network prediction
			Protein interactions
			RNA-seq assay
			coexpression
			molecular_function
		Added:
			Pathway or network prediction
			molecular_function
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.58lHsV' by 'bjoernoest' at 13:56, 20 Dec 2018 (approved):

	'dataProcesses' has been modified:
		Before:
			Browse Pathogens by Species
		After:
			Browse Pathogens by Species
			Browse Plants
		Added:
			Browse Plants
		Removed:

In Collections

RDA Covid-19 WG Resources

Support

General

contact form	Contact Form
help	OmicsDB Help
online documentation	About OmicsDB

Additional Information

Contact

contact@omicsdriven.com ORCID

Tools

Network - Plants	https://plants.omicsdb.org/tools/network
Heatmap - Plants	https://plants.omicsdb.org/tools/heatmap
GO enrichment - Plants	https://plants.omicsdb.org/tools/enrichment/go
Sample vs Sample expression - Plants	https://plants.omicsdb.org/tools/view_expressioninfo

Access / Retrieve Data

Conditions of Use

Applies to: Data use

OmicsDB Terms of Use

Data Access

Browse Pathogens by Species	http://pathogens.omicsdb.org
Browse Plants	http://plants.omicsdb.org

Publications

No publications available

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by bjoernoest

Maintains

OmicsDriven (Company) Lead

OmicsDB

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