MIAPE: Mass Spectrometry

Abbreviation: MIAPE-MS

General Information

This module identifies the minimum information required to report the use of a mass spectrometer in a proteomics experiment, sufficient to support both the effective (re-)interpretation and (re-) assessment of the data and the potential reproduction of the work that generated it.

Homepage http://www.psidev.info/groups/miape

Countries that developed this resource China , European Union , Germany , Sweden , Switzerland , United Kingdom , United States

Created in 2007

Taxonomic range

Archaea

Bacteria

Eukaryota

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: MIAPE-MS; MIAPE: Mass Spectrometry; DOI: https://doi.org/10.25504/FAIRsharing.5g1fma; Last edited: Jan. 17, 2019, 2:36 p.m.; Last accessed: Sep 17 2019 1:17 p.m.

This record is maintained by HUPO PSI (HUPOPSI)

Record added: Aug. 13, 2015, 2:54 p.m.
Record updated: Jan. 17, 2019, 2:36 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.5g1fma' by 'The FAIRsharing Team' at 14:36, 17 Jan 2019 (approved):

	'organizations' has been modified:
		Before:
			Engineering and Physical Sciences Research Council (EPSRC), UK|https://www.epsrc.ac.uk|Funds
			Human Proteome Organisation, Vancouver, BC, Canada|http://www.hupo.org|Funds
			Swiss Institute of Bioinformatics (SIB)|http://www.sib.swiss/|Maintains
			Proteomics Standards Initiative (PSI) - Human Proteomics Organisation (HUPO)|http://www.psidev.info|Maintains
		After:
			Engineering and Physical Sciences Research Council (EPSRC), UK|https://www.epsrc.ac.uk|Funds
			Human Proteome Organisation, Vancouver, BC, Canada|http://www.hupo.org|Funds
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
			Proteomics Standards Initiative (PSI) - Human Proteomics Organisation (HUPO)|http://www.psidev.info|Maintains
		Added:
			European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK|https://www.ebi.ac.uk/|Maintains
		Removed:
			Swiss Institute of Bioinformatics (SIB)|http://www.sib.swiss/|Maintains

Edits to 'https://fairsharing.org/FAIRsharing.5g1fma' by 'The FAIRsharing Team' at 11:20, 17 Jan 2019 (approved):

	'supportLinks' has been modified:
		Before:
			mailing list|psidev-ms-dev@lists.sourceforge.net
			online documentation|http://www.psidev.info/sites/default/files/MIAPE_MS_2.98.pdf
		After:
			mailing list|psidev-ms-dev@lists.sourceforge.net
		Added:
		Removed:
			online documentation|http://www.psidev.info/sites/default/files/MIAPE_MS_2.98.pdf

	'miriam_id' has been modified:
		Before: None
		After: 

	'dataProcesses' has been modified:
		Before:
		After:
			MIAPE Mass Spectrometry Specification Document
		Added:
			MIAPE Mass Spectrometry Specification Document
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.5g1fma' by 'The FAIRsharing Team' at 12:56, 28 Feb 2017 (approved):

	'homepage' has been modified:
		Before: http://www.psidev.info/node/91
		After: http://www.psidev.info/groups/miape Added MIAPE: Mass Spectrometry to policy Genomics: GTL Program Information and Data Sharing Policy (Office of Biological and Environment).

In Collections

HUPO Proteomics Standards Initiative

Support

General

Mailing List

Mass Spectrometry Mailing List

Additional Information

Contact

Pierre-Alain Binz

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Release

MIAPE Mass Spectrometry Specification Document

http://www.psidev.info/sites/default/files/2018-03/MIAPE_MS_2.98.pdf

Publications

Guidelines for reporting the use of mass spectrometry in proteomics.

Taylor CF,Binz PA,Aebersold R,Affolter M,Barkovich R,Deutsch EW,Horn DM,Huhmer A,Kussmann M,Lilley K,Macht M,Mann M,Muller D,Neubert TA,Nickson J,Patterson SD,Raso R,Resing K,Seymour SL,Tsugita A,Xenarios I,Zeng R,Julian RK Jr
Nat Biotechnol 2008

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

Terminology Artifacts

No semantic standards defined

Models and Formats

mz Markup Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Implementing Databases (4)

PRoteomics IDEntifications database
The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence.

ProteomeXchange
The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination.

ProteoRed
Carlos III Networked Proteomics Platform, ProteoRed-ISCIII is a National Network for the coordination, integration and development of the Spanish Proteomics Facilities providing proteomics services for supporting Spanish researchers in the field of proteomics.

Japan Proteome Standard Repository
jPOSTrepo (Japan ProteOme STandard Repository) is a data repository of sharing MS raw/processed data.

Implementing Policies

Office of Biological and Environment Genomics Program Information and Data Sharing Policy

Credit

Record Maintainer

This record is maintained by HUPO PSI (HUPOPSI)

Funds

Engineering and Physical Sciences Research Council (EPSRC), UK (Government body)
Human Proteome Organisation, Vancouver, BC, Canada (Consortium)

Maintains

European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, UK (Research institute)
Proteomics Standards Initiative (PSI) - Human Proteomics Organisation (HUPO) (Consortium) Lead

MIAPE: Mass Spectrometry

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