Genomes OnLine Database

Abbreviation:GOLD

General Information

The Genomes Online Database provides access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.

Homepage https://gold.jgi.doe.gov/

Countries that developed this resource United States

Created in 1997

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: GOLD; Genomes OnLine Database; DOI: https://doi.org/10.25504/FAIRsharing.5q1p14; Last edited: Feb. 8, 2021, 8:54 p.m.; Last accessed: Mar 04 2021 12:31 p.m.

Publication for citation Genomes OnLine database (GOLD) v.7: updates and new features. Mukherjee S,Stamatis D,Bertsch J,Ovchinnikova G,Katta HY,Mojica A,Chen IA,Kyrpides NC,Reddy T; Nucleic Acids Res ; 2018; 10.1093/nar/gky977;

This record is maintained by TBKREDDY

Record updated: Feb. 8, 2021, 7:34 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.5q1p14' by 'The FAIRsharing Team' at 19:34, 08 Feb 2021 (approved):

	'onto_domains' has been modified:
		Before:
			Experiment report
			Genome map
			Taxonomic classification
			phenotype
			region
		After:
			Biospecimen
			Genome map
			Taxonomic classification
			phenotype
			protocol
			region
			study design
		Added:
			Biospecimen
			protocol
			study design
		Removed:
			Experiment report

Edits to 'https://fairsharing.org/FAIRsharing.5q1p14' by 'The FAIRsharing Team' at 14:06, 22 Oct 2020 (approved):

	'organizations' has been modified:
		Before:
			Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains
			Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains
			University of Illinois at Urbana-Champaign|https://mcb.illinois.edu/departments/microbiology/|Maintains
			Joint Genome Institute, Walnut Creek, CA, USA|http://jgi.doe.gov|Maintains
			Integrated Genomics, Chicago Technology Park, Chicago, Illinois, USA|http://www.igenbio.com|Maintains
			Lawrence Livermore National Laboratory (LLNL), USA|https://www.llnl.gov/|Funds
			Los Alamos National Laboratory (LANL), Los Alamos, NM, USA|http://www.lanl.gov/|Funds
			National Aeronautics and Space Administration (NASA), Washington DC, USA|http://www.nasa.gov/|Maintains
			United States Department of Energy|http://www.energy.gov/|Funds
			University of Chicago, Department of Medicine, Chicago, Genome Biology Program, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, USA.|http://medicine.uchicago.edu|Maintains
			Joint Genome Institute, Walnut Creek, CA, USA|http://jgi.doe.gov|Funds
		After:
			Lawrence Livermore National Laboratory (LLNL), USA|https://www.llnl.gov/|Funds
			Los Alamos National Laboratory (LANL), Los Alamos, NM, USA|http://www.lanl.gov/|Funds
			United States Department of Energy|http://www.energy.gov/|Funds
			Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains,Funds
			Joint Genome Institute, Walnut Creek, CA, USA|http://jgi.doe.gov|Maintains,Funds
			National Aeronautics and Space Administration (NASA), Washington DC, USA|http://www.nasa.gov/|Funds
		Added:
			Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains,Funds
			Joint Genome Institute, Walnut Creek, CA, USA|http://jgi.doe.gov|Maintains,Funds
			National Aeronautics and Space Administration (NASA), Washington DC, USA|http://www.nasa.gov/|Funds
		Removed:
			Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains
			Lawrence Berkeley National Laboratory (LBNL), CA, USA|http://www.lbl.gov/about/|Maintains
			University of Illinois at Urbana-Champaign|https://mcb.illinois.edu/departments/microbiology/|Maintains
			Joint Genome Institute, Walnut Creek, CA, USA|http://jgi.doe.gov|Maintains
			Integrated Genomics, Chicago Technology Park, Chicago, Illinois, USA|http://www.igenbio.com|Maintains
			National Aeronautics and Space Administration (NASA), Washington DC, USA|http://www.nasa.gov/|Maintains
			University of Chicago, Department of Medicine, Chicago, Genome Biology Program, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, USA.|http://medicine.uchicago.edu|Maintains
			Joint Genome Institute, Walnut Creek, CA, USA|http://jgi.doe.gov|Funds

	'related_databases' has been modified:
		Before:
			Integrated Microbial Genomes And Microbiomes
			MycoCosm
		After:
			GenBank
			Integrated Microbial Genomes And Microbiomes
			Sequence Read Archive
			MycoCosm
		Added:
			GenBank
			Sequence Read Archive
		Removed:

	'supportLinks' has been modified:
		Before:
			email|mail@genomesonline.org
			help|https://gold.jgi.doe.gov/help
			wikipedia|https://en.wikipedia.org/wiki/Genomes_OnLine_Database
		After:
			blog|https://gold.jgi.doe.gov/news
			help|https://gold.jgi.doe.gov/help
			online documentation|https://gold.jgi.doe.gov/distribution
			online documentation|https://gold.jgi.doe.gov/statistics
			wikipedia|https://en.wikipedia.org/wiki/Genomes_OnLine_Database
		Added:
			blog|https://gold.jgi.doe.gov/news
			online documentation|https://gold.jgi.doe.gov/distribution
			online documentation|https://gold.jgi.doe.gov/statistics
		Removed:
			email|mail@genomesonline.org

	'description' has been modified:
		Before: Genomes online database: a listing of completed and ongoing genome projects.
		After: The Genomes Online Database provides access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. 

	'licences' has been modified:
		Before:
			JGI Data Policies and Disclaimer|http://jgi.doe.gov/disclaimer/|Data
		After:
			GOLD Data Usage Policy|https://gold.jgi.doe.gov/usagepolicy|Data
		Added:
			GOLD Data Usage Policy|https://gold.jgi.doe.gov/usagepolicy|Data
		Removed:
			JGI Data Policies and Disclaimer|http://jgi.doe.gov/disclaimer/|Data

	'onto_disciplines' has been modified:
		Before:
			Life Science
			Metabolomics
			Phylogenetics
		After:
			Genomics
			Metabolomics
			Metagenomics
			Phylogenetics
		Added:
			Genomics
			Metagenomics
		Removed:
			Life Science

	'dataProcesses' has been modified:
		Before:
			daily release, data release, 
			manual curation, data curation, 
			automated curation, data curation, 
			versioning by date, data versioning, 
			partial access to historic data available, data versioning, 
			search, data access, https://gold.jgi.doe.gov/search
			programatic access (JSON), data access, 
		After:
			Download, data release, https://gold.jgi.doe.gov/downloads
			SRA Explorer, data access, https://gold.jgi.doe.gov/sraexplorer
			Organism Distribution Map, data access, https://gold.jgi.doe.gov/organismmap
			Biosample Distribution Map, data access, https://gold.jgi.doe.gov/biosamplemap
			Search, data access, https://gold.jgi.doe.gov/search
			Metadata Search, data access, https://gold.jgi.doe.gov/metadatasearch
		Added:
			Download, data release, https://gold.jgi.doe.gov/downloads
			SRA Explorer, data access, https://gold.jgi.doe.gov/sraexplorer
			Organism Distribution Map, data access, https://gold.jgi.doe.gov/organismmap
			Biosample Distribution Map, data access, https://gold.jgi.doe.gov/biosamplemap
			Search, data access, https://gold.jgi.doe.gov/search
			Metadata Search, data access, https://gold.jgi.doe.gov/metadatasearch
		Removed:
			daily release, data release, 
			manual curation, data curation, 
			automated curation, data curation, 
			versioning by date, data versioning, 
			partial access to historic data available, data versioning, 
			search, data access, https://gold.jgi.doe.gov/search
			programatic access (JSON), data access, 

	'user_defined_tags' has been modified:
		Before:
			Genome Context
			Google maps
		After:
		Added:
		Removed:
			Genome Context
			Google maps

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide.|Kyrpides NC., |Bioinformatics|1999
			Genomes OnLine Database (GOLD): a monitor of genome projects world-wide.|Bernal A., Ear U., Kyrpides N., |Nucleic Acids Res.|2001
			The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.|Liolios K., Mavromatis K., Tavernarakis N., Kyrpides NC., |Nucleic Acids Res.|2008
			The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.|Liolios K., Chen IM., Mavromatis K., Tavernarakis N., Hugenholtz P., Markowitz VM., Kyrpides NC., |Nucleic Acids Res.|2010
		After:
			Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide.|Kyrpides NC., |Bioinformatics|1999
			Genomes OnLine Database (GOLD): a monitor of genome projects world-wide.|Bernal A., Ear U., Kyrpides N., |Nucleic Acids Res.|2001
			The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.|Liolios K., Mavromatis K., Tavernarakis N., Kyrpides NC., |Nucleic Acids Res.|2008
			The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.|Liolios K., Chen IM., Mavromatis K., Tavernarakis N., Hugenholtz P., Markowitz VM., Kyrpides NC., |Nucleic Acids Res.|2010
			Genomes OnLine database (GOLD) v.7: updates and new features.|Mukherjee S,Stamatis D,Bertsch J,Ovchinnikova G,Katta HY,Mojica A,Chen IA,Kyrpides NC,Reddy T|Nucleic Acids Res|2018
		Added:
			Genomes OnLine database (GOLD) v.7: updates and new features.|Mukherjee S,Stamatis D,Bertsch J,Ovchinnikova G,Katta HY,Mojica A,Chen IA,Kyrpides NC,Reddy T|Nucleic Acids Res|2018
		Removed:

	'homepage' has been modified:
		Before: http://www.genomesonline.org
		After: https://gold.jgi.doe.gov/

Edits to 'https://fairsharing.org/FAIRsharing.5q1p14' by 'The FAIRsharing Team' at 10:44, 26 Sep 2016 (approved):

	'description' has been modified:
		Before: Genomes online database: a listing of completed and ongoing genome projects
		After: Genomes online database: a listing of completed and ongoing genome projects.

In Collections

RDA Covid-19 WG Resources

Support

General

blog	News
help	Help
online documentation	Distribution Graphs
online documentation	Statistics
wikipedia	Wikipedia Entry

Additional Information

Contact

T.B.K. Reddy

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

GOLD Data Usage Policy

Data Release

Download

https://gold.jgi.doe.gov/downloads

Data Access

SRA Explorer	https://gold.jgi.doe.gov/sraexplorer
Organism Distribution Map	https://gold.jgi.doe.gov/organismmap
Biosample Distribution Map	https://gold.jgi.doe.gov/biosamplemap
Search	https://gold.jgi.doe.gov/search
Metadata Search	https://gold.jgi.doe.gov/metadatasearch

Publications

Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide.

Kyrpides NC.,
Bioinformatics 1999