ModelDB

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General Information

ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. A ModelDB entry contains a model's source code, concise description, and a citation of the article that published it. Models can be coded in any language for any environment. Model code can be viewed before downloading and browsers can be set to auto-launch the models.

Homepage http://senselab.med.yale.edu/modeldb

Countries that developed this resource United States

Created in 1996

Taxonomic range

All

Knowledge Domains

Subjects

User-defined Tags

Multi-scale model

In the following recommendations:

How to cite this record FAIRsharing.org: ModelDB; ModelDB; DOI: https://doi.org/10.25504/FAIRsharing.5rb3fk; Last edited: March 9, 2021, 4:06 p.m.; Last accessed: Apr 21 2021 6:28 p.m.

Publication for citation Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hines ML; J Comput Neurosci ; 2017; 10.1007/s10827-016-0623-7;

This record is maintained by ramcdougal ORCID

Record updated: Feb. 25, 2021, 2:20 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.5rb3fk' by 'The FAIRsharing Team' at 14:20, 25 Feb 2021 (approved):

	'organizations' has been modified:
		Before:
			NIDCD NIH HHS|https://www.nidcd.nih.gov/|Funds
			National Institute for Deafness and other Communication Disorders (NIDCD)|https://www.nidcd.nih.gov/|Funds
			Yale University|http://cpsc.yale.edu/|Maintains
			Yale University School of Medicine, New Haven, CT, USA.|http://ycmi.med.yale.edu/|Maintains
		After:
			NIDCD NIH HHS|https://www.nidcd.nih.gov/|Funds
			National Institute for Deafness and other Communication Disorders (NIDCD)|https://www.nidcd.nih.gov/|Funds
			Yale University|http://cpsc.yale.edu/|Maintains
			Yale University School of Medicine, New Haven, CT, USA.|http://ycmi.med.yale.edu/|Maintains
			NCI - Human Brain Project|https://www.humanbrainproject.eu/en/about/human-brain-project-ec-grants/|Funds
		Added:
			NCI - Human Brain Project|https://www.humanbrainproject.eu/en/about/human-brain-project-ec-grants/|Funds
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	'grants' has been modified:
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			R01 DC 009977
		After:
			5PO1DC004732
			R01 DC 009977
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			5PO1DC004732
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Edits to 'https://fairsharing.org/FAIRsharing.5rb3fk' by 'ramcdougal' at 16:30, 23 Feb 2021 (approved):

	'supportLinks' has been modified:
		Before:
			email|curator@modeldb.science
			help|https://senselab.med.yale.edu/modeldb/guide2.html
			rss|https://senselab.med.yale.edu/_siteNET/webfeed/rss2.0.aspx?db=2&daysback=14
			twitter|@SenseLabProject
		After:
			email|curator@modeldb.science
			help|https://senselab.med.yale.edu/modeldb/guide2.html
			twitter|@SenseLabProject
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		Removed:
			rss|https://senselab.med.yale.edu/_siteNET/webfeed/rss2.0.aspx?db=2&daysback=14

Edits to 'https://fairsharing.org/FAIRsharing.5rb3fk' by 'ramcdougal' at 16:13, 23 Feb 2021 (approved):

	'organizations' has been modified:
		Before:
			ELIXIR Italy|http://elixir-italy.org|Funds
			NIDCD NIH HHS|https://www.nidcd.nih.gov/|Funds
			Yale University|http://cpsc.yale.edu/|Maintains
			Yale University School of Medicine, New Haven, CT, USA.|http://ycmi.med.yale.edu/|Maintains
		After:
			NIDCD NIH HHS|https://www.nidcd.nih.gov/|Funds
			Yale University|http://cpsc.yale.edu/|Maintains
			Yale University School of Medicine, New Haven, CT, USA.|http://ycmi.med.yale.edu/|Maintains
			National Institute for Deafness and other Communication Disorders (NIDCD)|https://www.nidcd.nih.gov/|Funds
		Added:
			National Institute for Deafness and other Communication Disorders (NIDCD)|https://www.nidcd.nih.gov/|Funds
		Removed:
			ELIXIR Italy|http://elixir-italy.org|Funds

	'grants' has been modified:
		Before:
			5PO1DC004732
		After:
			R01 DC 009977
		Added:
			R01 DC 009977
		Removed:
			5PO1DC004732

	'publications' has been modified:
		Before:
			ModelDB: A Database to Support Computational Neuroscience.|Hines ML,Morse T,Migliore M,Carnevale NT,Shepherd GM|J Comput Neurosci|2004
			ModelDB: an environment for running and storing computational models and their results applied to neuroscience.|Peterson BE,Healy MD,Nadkarni PM,Miller PL,Shepherd GM|J Am Med Inform Assoc|1996
			ModelDB: making models publicly accessible to support computational neuroscience.|Migliore M,Morse TM,Davison AP,Marenco L,Shepherd GM,Hines ML|Neuroinformatics|2004
		After:
			ModelDB: A Database to Support Computational Neuroscience.|Hines ML,Morse T,Migliore M,Carnevale NT,Shepherd GM|J Comput Neurosci|2004
			ModelDB: an environment for running and storing computational models and their results applied to neuroscience.|Peterson BE,Healy MD,Nadkarni PM,Miller PL,Shepherd GM|J Am Med Inform Assoc|1996
			ModelDB: making models publicly accessible to support computational neuroscience.|Migliore M,Morse TM,Davison AP,Marenco L,Shepherd GM,Hines ML|Neuroinformatics|2004
			Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience|McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hines ML|J Comput Neurosci |2017
		Added:
			Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience|McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hines ML|J Comput Neurosci |2017
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.5rb3fk' by 'ramcdougal' at 15:58, 23 Feb 2021 (approved):

	'contactEmail' has been modified:
		Before: tom.morse@yale.edu
		After: curator@modeldb.science

	'contact' has been modified:
		Before: Thomas Morse
		After: Robert McDougal

Edits to 'https://fairsharing.org/FAIRsharing.5rb3fk' by 'The FAIRsharing Team' at 11:21, 23 Feb 2021 (approved):

	'supportLinks' has been modified:
		Before:
			help|https://senselab.med.yale.edu/modeldb/guide2.html
			rss|https://senselab.med.yale.edu/_siteNET/webfeed/rss2.0.aspx?db=2&daysback=14
			twitter|@SenseLabProject
		After:
			email|curator@modeldb.science
			help|https://senselab.med.yale.edu/modeldb/guide2.html
			rss|https://senselab.med.yale.edu/_siteNET/webfeed/rss2.0.aspx?db=2&daysback=14
			twitter|@SenseLabProject
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			email|curator@modeldb.science
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	'description' has been modified:
		Before: ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. ModelDB is tightly coupled with NeuronDB. Models can be coded in any language for any environment. Model code can be viewed before downloading and browsers can be set to auto-launch the models.
		After: ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. A ModelDB entry contains a model's source code, concise description, and a citation of the article that published it. Models can be coded in any language for any environment. Model code can be viewed before downloading and browsers can be set to auto-launch the models.

Edits to 'https://fairsharing.org/FAIRsharing.5rb3fk' by 'The FAIRsharing Team' at 08:51, 26 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Thomas Morse
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In Collections

Systems Medicine

Support

General

support email	modelDB curators
help	https://senselab.med.yale.edu/modeldb/gu ...
twitter	@SenseLabProject

Additional Information

Contact

Robert McDougal

Tools

SimToolDB

https://senselab.med.yale.edu/SimToolDB/

Access / Retrieve Data

Conditions of Use

Data Versioning

access to historical files available for most resources

No link recorded

Data Release

weekly release

No link recorded

Data Access

https://senselab.med.yale.edu/modeldb/searchFulltext.cshtml

Publications

ModelDB: A Database to Support Computational Neuroscience.

Hines ML,Morse T,Migliore M,Carnevale NT,Shepherd GM
J Comput Neurosci 2004

View Paper (PubMed) View Publication

ModelDB: an environment for running and storing computational models and their results applied to neuroscience.

Peterson BE,Healy MD,Nadkarni PM,Miller PL,Shepherd GM
J Am Med Inform Assoc 1996

View Paper (PubMed) View Publication

ModelDB: making models publicly accessible to support computational neuroscience.

Migliore M,Morse TM,Davison AP,Marenco L,Shepherd GM,Hines ML
Neuroinformatics 2004

View Paper (PubMed) View Publication

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience

McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hines ML
J Comput Neurosci 2017

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Cell Ontology

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

Credit

Record Maintainer

This record is maintained by ramcdougal ORCID

Funds

NIDCD NIH HHS
National Institute for Deafness and other Communication Disorders (NIDCD) (Government body)
NCI - Human Brain Project

Maintains

Yale University (University)
Yale University School of Medicine, New Haven, CT, USA.

Grant Number(s)

5PO1DC004732 (NCI - Human Brain Project)
R01 DC 009977 (National Institute for Deafness and other Communication Disorders (NIDCD))

ModelDB

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