Edits to 'https://fairsharing.org/FAIRsharing.5ry74y' by 'The FAIRsharing Team' at 13:02, 22 Mar 2021 (approved):
'standardsImplemented' has been modified:
Before:
After:
Bioschemas
Added:
Bioschemas
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.5ry74y' by 'The FAIRsharing Team' at 20:43, 19 Mar 2021 (approved):
'supportLinks' has been modified:
Before:
help|https://bridgedb.github.io/pages/docs.html
online documentation|https://github.com/bridgedb/
tess training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial-ce581787-b018-4a34-b161-5ed1b9cc8902
tess training|https://tess.elixir-europe.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene
tess training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial
twitter|@BridgeDbProject
After:
TeSS training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial-ce581787-b018-4a34-b161-5ed1b9cc8902
TeSS training|https://tess.elixir-europe.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene
TeSS training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial
help|https://bridgedb.github.io/pages/docs.html
online documentation|https://github.com/bridgedb/
twitter|@BridgeDbProject
Added:
TeSS training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial-ce581787-b018-4a34-b161-5ed1b9cc8902
TeSS training|https://tess.elixir-europe.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene
TeSS training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial
Removed:
tess training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial-ce581787-b018-4a34-b161-5ed1b9cc8902
tess training|https://tess.elixir-europe.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene
tess training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial
'description' has been modified:
Before: BridgeDb is a framework and data repository for finding and mapping equivalent identifiers from various databases. BridgeDb has many facets: providing a framework, live services, and identifier mapping files for genes, gene-variant, proteins, metabolites and interactions.
After: BridgeDb is a framework and data repository for finding and mapping equivalent identifiers from various databases. BridgeDb provides a framework, live services, and identifier mapping files for genes, gene-variant, proteins, metabolites and interactions.
'dataProcesses' has been modified:
Before:
Search via Web Services, data access, https://bridgedb.github.io/pages/webservice.html
Download All, data release, https://bridgedb.github.io/data/gene_database/
Download A. gambiae data, data release, https://doi.org/10.5281/zenodo.3667670
Download A. thaliana data, data release, https://doi.org/10.5281/zenodo.3667670
Download B. subtilis data, data release, https://doi.org/10.5281/zenodo.3667670
Download C. familiaris data, data release, https://doi.org/10.5281/zenodo.3667670
Download C. elegans data, data release, https://doi.org/10.5281/zenodo.3667670
Download B. taurus data, data release, https://doi.org/10.5281/zenodo.3667670
Download E. coli data, data release, https://doi.org/10.5281/zenodo.3667670
Download D. rerio data, data release, https://doi.org/10.5281/zenodo.3667670
Download D. melanogaster data, data release, https://doi.org/10.5281/zenodo.3667670
Download H. sapiens data, data release, https://doi.org/10.5281/zenodo.3667670
Download G. zeae data, data release, https://doi.org/10.5281/zenodo.3667670
Download G. gallus data, data release, https://doi.org/10.5281/zenodo.3667670
Download P. troglodytes data, data release, https://doi.org/10.5281/zenodo.3667670
Download O. japonica data, data release, https://doi.org/10.5281/zenodo.3667670
Download M. musculus data, data release, https://doi.org/10.5281/zenodo.3667670
Download Z. mays data, data release, https://doi.org/10.5281/zenodo.3667670
Download S. cerevisiae data, data release, https://doi.org/10.5281/zenodo.3667670
Download R. norvegicus data, data release, https://doi.org/10.5281/zenodo.3667670
After:
Search via Web Services, data access, https://bridgedb.github.io/pages/webservice.html
Download All, data release, https://bridgedb.github.io/data/gene_database/
Download A. gambiae data, data release, https://doi.org/10.5281/zenodo.3667670
Download A. thaliana data, data release, https://doi.org/10.5281/zenodo.3667670
Download B. subtilis data, data release, https://doi.org/10.5281/zenodo.3667670
Download C. familiaris data, data release, https://doi.org/10.5281/zenodo.3667670
Download C. elegans data, data release, https://doi.org/10.5281/zenodo.3667670
Download B. taurus data, data release, https://doi.org/10.5281/zenodo.3667670
Download E. coli data, data release, https://doi.org/10.5281/zenodo.3667670
Download D. rerio data, data release, https://doi.org/10.5281/zenodo.3667670
Download D. melanogaster data, data release, https://doi.org/10.5281/zenodo.3667670
Download H. sapiens data, data release, https://doi.org/10.5281/zenodo.3667670
Download G. zeae data, data release, https://doi.org/10.5281/zenodo.3667670
Download G. gallus data, data release, https://doi.org/10.5281/zenodo.3667670
Download P. troglodytes data, data release, https://doi.org/10.5281/zenodo.3667670
Download O. japonica data, data release, https://doi.org/10.5281/zenodo.3667670
Download M. musculus data, data release, https://doi.org/10.5281/zenodo.3667670
Download Z. mays data, data release, https://doi.org/10.5281/zenodo.3667670
Download S. cerevisiae data, data release, https://doi.org/10.5281/zenodo.3667670
Download R. norvegicus data, data release, https://doi.org/10.5281/zenodo.3667670
Download Interactions Data, data release, https://doi.org/10.6084/m9.figshare.135511761
Download Complexes Data, data release, https://doi.org/10.6084/m9.figshare.12278810.v1
Download Human Coronaviruses data, data release, https://doi.org/10.5281/zenodo.3860798
Download Publications Data, data release, https://doi.org/10.6084/m9.figshare.13270523.v1
Download Metabolites Data, data release, https://doi.org/10.6084/m9.figshare.13550384.v1
Added:
Download Interactions Data, data release, https://doi.org/10.6084/m9.figshare.135511761
Download Complexes Data, data release, https://doi.org/10.6084/m9.figshare.12278810.v1
Download Human Coronaviruses data, data release, https://doi.org/10.5281/zenodo.3860798
Download Publications Data, data release, https://doi.org/10.6084/m9.figshare.13270523.v1
Download Metabolites Data, data release, https://doi.org/10.6084/m9.figshare.13550384.v1
Removed:
'countries' has been modified:
Before:
Netherlands
After:
Netherlands
United Kingdom
United States
Added:
United Kingdom
United States
Removed:
Edits to 'https://fairsharing.org/FAIRsharing.5ry74y' by 'The FAIRsharing Team' at 20:40, 19 Mar 2021 (approved):
'organizations' has been modified:
Before:
After:
Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, the Netherlands|https://www.maastrichtuniversity.nl/research/bioinformatics|Maintains
Gladstone Institute of Cardiovascular Disease, San Francisco, USA|https://gladstone.org/science/cardiovascular-disease-institute|Maintains
University of Missouri, USA|http://missouri.edu/|Maintains
Heriot-Watt University, Edinburgh, United Kingdom|https://www.hw.ac.uk/|Maintains
The University of Manchester, Manchester, UK|http://www.manchester.ac.uk/|Maintains
Added:
Department of Bioinformatics - BiGCaT, Maastricht University, Maastricht, the Netherlands|https://www.maastrichtuniversity.nl/research/bioinformatics|Maintains
Gladstone Institute of Cardiovascular Disease, San Francisco, USA|https://gladstone.org/science/cardiovascular-disease-institute|Maintains
University of Missouri, USA|http://missouri.edu/|Maintains
Heriot-Watt University, Edinburgh, United Kingdom|https://www.hw.ac.uk/|Maintains
The University of Manchester, Manchester, UK|http://www.manchester.ac.uk/|Maintains
Removed:
'accessPoints' has been modified:
Before:
REST|https://webservice.bridgedb.org/|OpenAPI
After:
REST|https://bridgedb.github.io/pages/webservice.html|BridgeDB Web Services
Added:
REST|https://bridgedb.github.io/pages/webservice.html|BridgeDB Web Services
Removed:
REST|https://webservice.bridgedb.org/|OpenAPI
'supportLinks' has been modified:
Before:
forum|https://groups.google.com/forum/#!forum/bridgedb-discuss
help|https://tess.elixir-europe.org/materials/bridgedbr-tutorial
After:
help|https://bridgedb.github.io/pages/docs.html
online documentation|https://github.com/bridgedb/
tess training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial-ce581787-b018-4a34-b161-5ed1b9cc8902
tess training|https://tess.elixir-europe.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene
tess training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial
twitter|@BridgeDbProject
Added:
help|https://bridgedb.github.io/pages/docs.html
online documentation|https://github.com/bridgedb/
tess training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial-ce581787-b018-4a34-b161-5ed1b9cc8902
tess training|https://tess.elixir-europe.org/materials/how-to-install-and-load-the-identifier-mapping-service-with-data-needed-for-gene-to-variant-and-variant-to-gene
tess training|https://tess.elixir-europe.org/materials/bridgedbr-tutorial
twitter|@BridgeDbProject
Removed:
forum|https://groups.google.com/forum/#!forum/bridgedb-discuss
help|https://tess.elixir-europe.org/materials/bridgedbr-tutorial
'name' has been modified:
Before: BridgeDb Metabolite ID Mappings database
After: BridgeDb
'licences' has been modified:
Before:
Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
After:
Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication|https://creativecommons.org/publicdomain/zero/1.0/|Data
Apache License 2.0|http://www.apache.org/licenses/LICENSE-2.0|Software
EMBL-EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Added:
EMBL-EBI Terms of Use|http://www.ebi.ac.uk/about/terms-of-use|Data
Removed:
'tools' has been modified:
Before:
BridgeDb|2.2|https://bridgedb.org/
PathVisio|3.1|https://pathvisio.org/
After:
BridgeDB Java Library||https://github.com/bridgedb/BridgeDb/releases
Added:
BridgeDB Java Library||https://github.com/bridgedb/BridgeDb/releases
Removed:
BridgeDb|2.2|https://bridgedb.org/
PathVisio|3.1|https://pathvisio.org/
'onto_disciplines' has been modified:
Before:
Biology
Chemistry
Life Science
Metabolomics
After:
Biology
Chemistry
Metabolomics
Systems Biology
Added:
Systems Biology
Removed:
Life Science
'onto_domains' has been modified:
Before:
After:
molecular interaction
Added:
molecular interaction
Removed:
'dataProcesses' has been modified:
Before:
After:
Search via Web Services, data access, https://bridgedb.github.io/pages/webservice.html
Download All, data release, https://bridgedb.github.io/data/gene_database/
Download A. gambiae data, data release, https://doi.org/10.5281/zenodo.3667670
Download A. thaliana data, data release, https://doi.org/10.5281/zenodo.3667670
Download B. subtilis data, data release, https://doi.org/10.5281/zenodo.3667670
Download C. familiaris data, data release, https://doi.org/10.5281/zenodo.3667670
Download C. elegans data, data release, https://doi.org/10.5281/zenodo.3667670
Download B. taurus data, data release, https://doi.org/10.5281/zenodo.3667670
Download E. coli data, data release, https://doi.org/10.5281/zenodo.3667670
Download D. rerio data, data release, https://doi.org/10.5281/zenodo.3667670
Download D. melanogaster data, data release, https://doi.org/10.5281/zenodo.3667670
Download H. sapiens data, data release, https://doi.org/10.5281/zenodo.3667670
Download G. zeae data, data release, https://doi.org/10.5281/zenodo.3667670
Download G. gallus data, data release, https://doi.org/10.5281/zenodo.3667670
Download P. troglodytes data, data release, https://doi.org/10.5281/zenodo.3667670
Download O. japonica data, data release, https://doi.org/10.5281/zenodo.3667670
Download M. musculus data, data release, https://doi.org/10.5281/zenodo.3667670
Download Z. mays data, data release, https://doi.org/10.5281/zenodo.3667670
Download S. cerevisiae data, data release, https://doi.org/10.5281/zenodo.3667670
Download R. norvegicus data, data release, https://doi.org/10.5281/zenodo.3667670
Added:
Search via Web Services, data access, https://bridgedb.github.io/pages/webservice.html
Download All, data release, https://bridgedb.github.io/data/gene_database/
Download A. gambiae data, data release, https://doi.org/10.5281/zenodo.3667670
Download A. thaliana data, data release, https://doi.org/10.5281/zenodo.3667670
Download B. subtilis data, data release, https://doi.org/10.5281/zenodo.3667670
Download C. familiaris data, data release, https://doi.org/10.5281/zenodo.3667670
Download C. elegans data, data release, https://doi.org/10.5281/zenodo.3667670
Download B. taurus data, data release, https://doi.org/10.5281/zenodo.3667670
Download E. coli data, data release, https://doi.org/10.5281/zenodo.3667670
Download D. rerio data, data release, https://doi.org/10.5281/zenodo.3667670
Download D. melanogaster data, data release, https://doi.org/10.5281/zenodo.3667670
Download H. sapiens data, data release, https://doi.org/10.5281/zenodo.3667670
Download G. zeae data, data release, https://doi.org/10.5281/zenodo.3667670
Download G. gallus data, data release, https://doi.org/10.5281/zenodo.3667670
Download P. troglodytes data, data release, https://doi.org/10.5281/zenodo.3667670
Download O. japonica data, data release, https://doi.org/10.5281/zenodo.3667670
Download M. musculus data, data release, https://doi.org/10.5281/zenodo.3667670
Download Z. mays data, data release, https://doi.org/10.5281/zenodo.3667670
Download S. cerevisiae data, data release, https://doi.org/10.5281/zenodo.3667670
Download R. norvegicus data, data release, https://doi.org/10.5281/zenodo.3667670
Removed:
'publications' has been modified:
Before:
After:
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services.|van Iersel MP,Pico AR,Kelder T,Gao J,Ho I,Hanspers K,Conklin BR,Evelo CT|BMC Bioinformatics|2010
Added:
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services.|van Iersel MP,Pico AR,Kelder T,Gao J,Ho I,Hanspers K,Conklin BR,Evelo CT|BMC Bioinformatics|2010
Removed:
'related_databases' has been modified:
Before:
WikiPathways
After:
WikiPathways
Ensembl
The Human Metabolome Database
Added:
Ensembl
The Human Metabolome Database
Removed:
'shortname' has been modified:
Before: BridgeDb Metabolite ID Mappings database
After: BridgeDb
'taxonomies' has been modified:
Before:
Not applicable
After:
Anopheles gambiae
Arabidopsis thaliana
Bacillus subtilis
Bos taurus
Caenorhabditis elegans
Canis familiaris
Coronaviridae
Danio rerio
Drosophila melanogaster
Escherichia coli
Gallus gallus
Gibberella zeae
Homo sapiens
Mus musculus
Oryza sativa L. ssp. japonica
Pan troglodytes
Rattus norvegicus
Saccharomyces cerevisiae
Zea mays
Added:
Anopheles gambiae
Arabidopsis thaliana
Bacillus subtilis
Bos taurus
Caenorhabditis elegans
Canis familiaris
Coronaviridae
Danio rerio
Drosophila melanogaster
Escherichia coli
Gallus gallus
Gibberella zeae
Homo sapiens
Mus musculus
Oryza sativa L. ssp. japonica
Pan troglodytes
Rattus norvegicus
Saccharomyces cerevisiae
Zea mays
Removed:
Not applicable
'homepage' has been modified:
Before: https://www.bridgedb.org/mapping-databases/hmdb-metabolite-mappings/
After: https://bridgedb.github.io
'description' has been modified:
Before: Metabolite identifier mapping database for small chemical compounds, based on curated information from HMDB, ChEBI, and Wikidata.
After: BridgeDb is a framework and data repository for finding and mapping equivalent identifiers from various databases. BridgeDb has many facets: providing a framework, live services, and identifier mapping files for genes, gene-variant, proteins, metabolites and interactions.
Edits to 'https://fairsharing.org/FAIRsharing.5ry74y' by 'The FAIRsharing Team' at 10:59, 23 Feb 2021 (approved):
'contact' has been modified:
Before: Denise Slenter
After:
'contactORCID' has been modified:
Before: 0000-0001-8449-1318
After:
Edits to 'https://fairsharing.org/FAIRsharing.5ry74y' by 'The FAIRsharing Team' at 10:37, 07 Apr 2020 (approved):
'user_defined_tags' has been modified:
Before:
After:
COVID-19
Added:
COVID-19
Removed: