Pathway Commons
Abbreviation:PC
Homepage http://www.pathwaycommons.org
Developed in Canada , United States
Created in 2009
Taxonomic range
Knowledge Domains BETA
Subjects BETA
How to cite this record FAIRsharing.org: PC; Pathway Commons; DOI: https://doi.org/10.25504/FAIRsharing.5y3gdd; Last edited: Jan. 8, 2019, 1:18 p.m.; Last accessed: Jan 23 2019 9:44 p.m.
Record updated: Jan. 12, 2018, 1:42 p.m. by The FAIRsharing Team.
| FAQ | http://www.pathwaycommons.org/#faq |
| forum | https://groups.google.com/forum/#!forum/ ... |
| Mailing List | None |
| @PathwayCommons |
Additional Information
| Contact | Gary Bader |
| Identifiers.org | MIR:00000073 |
| CyPathwayCommons | http://apps.cytoscape.org/apps/cypath2 | 2 |
| PCViz | http://www.sanderlab.org/pcviz/ |
Conditions of Use
Applies to: Data use- Publicly available data
Data Access
| Download | http://www.pathwaycommons.org/archives/ |
REST Web Services
| PC2 web services (BioPAX db) | http://www.pathwaycommons.org/pc2/ |
| Old PC portal and web services | http://www.pathwaycommons.org/pc/ |
Other Web Services
| PC2 SPARQL endpoint | http://rdf.pathwaycommons.org/sparql/ |
| PC2 faceted browser (FCT, RDF) | http://rdf.pathwaycommons.org/fct/ |
Pathway Commons, a web resource for biological pathway data.
Cerami EG., Gross BE., Demir E., Rodchenkov I., Babur O., Anwar N., Schultz N., Bader GD., Sander C.,
Nucleic Acids Res. 2011
Reporting Guidelines
No guidelines defined
Terminology Artifacts
Models and Formats
Metrics
No metrics standards defined
- IntAct molecular interaction database
- Identifiers.org Registry
- WikiPathways
- Comparative Toxicogenomics Database
- PhosphoSite Plus
- DrugBank
- Reactome - a curated knowledgebase of biological pathways
- Small Molecule Pathway Database
- Pathway Interaction Database
- UniProt Knowledgebase
- miRTarBase
- The Network Data Exchange (NDEx)
This record is not implemented by any policy.
Record Maintainer
This record is maintained by garybader ORCID and IgorRodchenkov (rodche)
Funds
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)
National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
Maintains
Computational Biology Center (cBio), Memorial Sloan-Kettering Cancer Center, New York, USA
Dana-Farber Cancer Institute, USA (Research institute)
Grant Number(s)
1T32 GM083937 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
2R01GM070743-06 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
P41HG004118 (National Human Genome Research Institute (NHGRI), Bethesda, MD, USA)
