databases > DOI:10.25504/FAIRsharing.63m4ss

ready HAMAP database of microbial protein families

Abbreviation:HAMAP

General Information
HAMAP is a system, based on manual protein annotation, that identifies and semi-automatically annotates proteins that are part of well-conserved families or subfamilies: the HAMAP families. HAMAP is based on manually created family rules and is applied to bacterial, archaeal and plastid-encoded proteins.




How to cite this record FAIRsharing.org: HAMAP; HAMAP database of microbial protein families; DOI: https://doi.org/10.25504/FAIRsharing.63m4ss; Last edited: Aug. 22, 2018, 1:46 p.m.; Last accessed: Sep 25 2018 7:41 a.m.


This record is maintained by alanbridge

Record updated: Aug. 4, 2018, 9:20 a.m. by The FAIRsharing Team.

Show edit history


Support

General

Additional Information



Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Curation

Data Access




Publications

HAMAP in 2013, new developments in the protein family classification and annotation system.

Pedruzzi I., Rivoire C., Auchincloss AH., Coudert E., Keller G., de Castro E., Baratin D., Cuche BA., Bougueleret L., Poux S., Redaschi N., Xenarios I., Bridge A.,
Nucleic Acids Res. 2013

View Paper (PubMed) View Publication

HAMAP in 2015: updates to the protein family classification and annotation system.

Pedruzzi I,Rivoire C,Auchincloss AH,Coudert E,Keller G,de Castro E,Baratin D,Cuche BA,Bougueleret L,Poux S,Redaschi N,Xenarios I,Bridge A
Nucleic Acids Res 2014

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats


Related Databases

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • JRP09 (Swiss National Sciences Foundation (SNCF))

  • JRP13 (Swiss National Sciences Foundation (SNCF))

  • U41HG006104 (U.S. National Library of Medicine)