Progenetix - genomic copy number aberrations in cancer
Abbreviation:Progenetix
General Information
The Progenetix database provides an overview of copy number abnormalities in human cancer from Comparative Genomic Hybridization (CGH) experiments. With 30817 cases from 1016 publications (Oct 2013), Progenetix is the largest curated database for whole genome CGH profiles. The current dataset contains 20621 chromosomal CGH and 10302 profiles from genomic array experiments. This data covers 365 diagnostic entities according to the International Classification of Disease in Oncology (ICD-O 3).
Additionally, the website attempts to lists all publications referring to cancer genome profiling experiments.
How to cite this record
FAIRsharing.org: Progenetix; Progenetix - genomic copy number aberrations in cancer; DOI: https://doi.org/10.25504/FAIRsharing.65tdnz;
Last edited: Dec. 19, 2019, 3:47 p.m.; Last accessed: Jan 22 2021 10:41 p.m.
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Edits to 'https://fairsharing.org/FAIRsharing.65tdnz' by 'The FAIRsharing Team' at 09:28, 19 Dec 2019 (approved):
'licences' has been modified:
Before:
Creative Commons Attribution-NonCommercial-NoDerivs 2.5 Switzerland (CC BY-NC-ND 2.5 CH)|https://creativecommons.org/licenses/by-nc-nd/2.5/ch/|Data
Progentix Website Terms and Conditions|http://www.progenetix.org/Wiki/ProgenetixGuide/RegistrationAndLicensing|Data
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Creative Commons Attribution-NonCommercial-NoDerivs 2.5 Switzerland (CC BY-NC-ND 2.5 CH)|https://creativecommons.org/licenses/by-nc-nd/2.5/ch/|Data
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Removed:
Progentix Website Terms and Conditions|http://www.progenetix.org/Wiki/ProgenetixGuide/RegistrationAndLicensing|Data
'accessPoints' has been modified:
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Other|http://www.progenetix.org/Wiki/ProgenetixGuide/ProgenetixAPI|Protogenetix API
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Other|https://info.progenetix.org/doc/+generated-doc-API-api/|API::api.cgi Perl Code
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Other|https://info.progenetix.org/doc/+generated-doc-API-api/|API::api.cgi Perl Code
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Other|http://www.progenetix.org/Wiki/ProgenetixGuide/ProgenetixAPI|Protogenetix API
'supportLinks' has been modified:
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help|http://www.progenetix.org/Wiki/ProgenetixGuide
help|@progenetix
online documentation|http://www.progenetix.org/cgi-bin/reader.cgi?project=progenetix&tags_m=guide
After:
blog|https://info.progenetix.org/categories/news.html
help|https://info.progenetix.org/categories/howto.html
online documentation|https://info.progenetix.org/categories/about.html
twitter|@progenetix
Added:
blog|https://info.progenetix.org/categories/news.html
help|https://info.progenetix.org/categories/howto.html
online documentation|https://info.progenetix.org/categories/about.html
twitter|@progenetix
Removed:
help|http://www.progenetix.org/Wiki/ProgenetixGuide
help|@progenetix
online documentation|http://www.progenetix.org/cgi-bin/reader.cgi?project=progenetix&tags_m=guide
'dataProcesses' has been modified:
Before:
manual curation
Query (Gene CNA Frequencies)
Sample Search
register
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manual curation
Query
Sample Search
upload
browse publications
Added:
Query
upload
browse publications
Removed:
Query (Gene CNA Frequencies)
register
'onto_domains' has been modified:
Before:
DNA microarray
Gene expression data
cancer
chromosomal aberration
comparative genomic hybridization by array
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Biocuration
DNA microarray
Gene expression data
cancer
chromosomal aberration
comparative genomic hybridization by array
curated information
literature curation
Added:
Biocuration
curated information
literature curation
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Access / Retrieve Data
Conditions of Use
Data Curation
Data Access
Other Web Services
Publications
Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data
Baudis M
BMC Cancer. 2007 Dec 18;7:226. 2007
View Paper (PubMed)
View Publication
Online database and bioinformatics toolbox to support data mining in cancer cytogenetics.
Baudis M
Biotechniques. 2006 Mar;40(3):269-70, 272. 2006
View Paper (PubMed)
View Publication
Progenetix.net: an online repository for molecular cytogenetic aberration data.
Baudis M, Cleary ML.
Bioinformatics. 2001 Dec;17(12):1228-9. 2001
View Paper (PubMed)
View Publication
Related Standards
Reporting Guidelines
No guidelines defined
Models and Formats
No syntax standards defined
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
Implementing Policies
This record is not implemented by any policy.
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