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Protein Circular Dichroism Data Bank

Abbreviation:PCDDB

Recommended

General Information

The Protein Circular Dichroism Data Bank (PCDDB) is an open-access online repository for protein circular dichroism spectral- and meta-data. Users may freely extract and deposit validated data and the validation process is conveniently integrated into the deposition procedure. The PCDDB is a collaborative project between Birkbeck College, University of London and Queen Mary University of London and is funded by the U.K.'s Biotechnology and Biological Sciences Research Council.

Homepage http://pcddb.cryst.bbk.ac.uk

Countries that developed this resource United Kingdom

Created in 2009

Taxonomic range

All

Knowledge Domains

Subjects

In the following recommendations:

How to cite this record FAIRsharing.org: PCDDB; Protein Circular Dichroism Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.65yfxp; Last edited: March 11, 2021, 2:46 p.m.; Last accessed: Sep 16 2021 11:12 p.m.

This record is maintained by pcddb

Record updated: March 11, 2021, 2:43 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.65yfxp' by 'The FAIRsharing Team' at 14:43, 11 Mar 2021 (approved):

	'standardsImplemented' has been modified:
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		After:
			Bioschemas
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			Bioschemas
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Edits to 'https://fairsharing.org/FAIRsharing.65yfxp' by 'The FAIRsharing Team' at 10:45, 05 Mar 2021 (approved):

	'organizations' has been modified:
		Before:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Department of Crystallography, Birkbeck College, University of London, London, England, UK|http://www.bbk.ac.uk/biology/|Maintains
			School of Biological and Chemical Sciences, Queen Mary, University of London|http://www.sbcs.qmul.ac.uk|Maintains
		After:
			Biotechnology and Biological Sciences Research Council (BBSRC), UK|https://bbsrc.ukri.org|Funds
			Department of Crystallography, Birkbeck College, University of London, London, England, UK|http://www.bbk.ac.uk/biology/|Maintains
			School of Biological and Chemical Sciences, Queen Mary, University of London|http://www.sbcs.qmul.ac.uk|Maintains
			International Union of Pure and Applied Chemistry (IUPAC)|https://iupac.org|Funds
		Added:
			International Union of Pure and Applied Chemistry (IUPAC)|https://iupac.org|Funds
		Removed:

	'supportLinks' has been modified:
		Before:
			twitter|@pcddb
		After:
			blog|https://pcddb.cryst.bbk.ac.uk/news.php
			email|pcddb@mail.cryst.bbk.ac.uk
			help|https://pcddb.cryst.bbk.ac.uk/help.php
			online documentation|https://www.youtube.com/channel/UC0ykpuE4phHXFJPSVQuN3kA
			online documentation|https://pcddb.cryst.bbk.ac.uk/glossary.php
			twitter|@pcddb
		Added:
			blog|https://pcddb.cryst.bbk.ac.uk/news.php
			email|pcddb@mail.cryst.bbk.ac.uk
			help|https://pcddb.cryst.bbk.ac.uk/help.php
			online documentation|https://www.youtube.com/channel/UC0ykpuE4phHXFJPSVQuN3kA
			online documentation|https://pcddb.cryst.bbk.ac.uk/glossary.php
		Removed:

	'contactORCID' has been modified:
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		After: 0000-0003-1670-5796

	'onto_disciplines' has been modified:
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			Life Science
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			Life Science
			Proteomics
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			Proteomics
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	'dataProcesses' has been modified:
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			Browse & search, data access, https://pcddb.cryst.bbk.ac.uk/search.php?st1=IDNameAlts&q=
			Download, data access, https://pcddb.cryst.bbk.ac.uk/download.php
			Deposit, data curation, https://pcddb.cryst.bbk.ac.uk/
		Added:
			Browse & search, data access, https://pcddb.cryst.bbk.ac.uk/search.php?st1=IDNameAlts&q=
			Download, data access, https://pcddb.cryst.bbk.ac.uk/download.php
			Deposit, data curation, https://pcddb.cryst.bbk.ac.uk/
		Removed:

	'contact' has been modified:
		Before: Professor B.A. Wallace
		After: Bonnie A. Wallace

	'contactEmail' has been modified:
		Before: pcddb@mail.cryst.bbk.ac.uk
		After: b.wallace@mail.cryst.bbk.ac.uk

	'grants' has been modified:
		Before:
		After:
			2010-033-2-024
			F010346
			F010362
			G023476
			I023887
			J019135
			J019194
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			2010-033-2-024
			F010346
			F010362
			G023476
			I023887
			J019135
			J019194
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	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			PCDDB: the Protein Circular Dichroism Data Bank, a repository for circular dichroism spectral and metadata.|Whitmore L, Woollett B, Miles AJ, Klose DP, Janes RW, Wallace BA.|Nucleic Acids Research|2011
			Circular dichroism spectral data and metadata in the Protein Circular Dichroism Data Bank (PCDDB): a tutorial guide to accession and deposition.|Janes RW, Miles AJ, Woollett B, Whitmore L, Klose D, Wallace BA.|Chirality|2012
			PCDDB: the Protein Circular Dichroism Data Bank, a repository for circular dichroism spectral and metadata.|Whitmore L,Woollett B,Miles AJ,Klose DP,Janes RW,Wallace BA|Nucleic Acids Res|2010
		After:
			PCDDB: the Protein Circular Dichroism Data Bank, a repository for circular dichroism spectral and metadata.|Whitmore L, Woollett B, Miles AJ, Klose DP, Janes RW, Wallace BA.|Nucleic Acids Research|2011
			Circular dichroism spectral data and metadata in the Protein Circular Dichroism Data Bank (PCDDB): a tutorial guide to accession and deposition.|Janes RW, Miles AJ, Woollett B, Whitmore L, Klose D, Wallace BA.|Chirality|2012
			PCDDB: the Protein Circular Dichroism Data Bank, a repository for circular dichroism spectral and metadata.|Whitmore L,Woollett B,Miles AJ,Klose DP,Janes RW,Wallace BA|Nucleic Acids Res|2010
			PCDDB: new developments at the Protein Circular Dichroism Data Bank.|Whitmore L,Miles AJ,Mavridis L,Janes RW,Wallace BA|Nucleic Acids Res|2016
		Added:
			PCDDB: new developments at the Protein Circular Dichroism Data Bank.|Whitmore L,Miles AJ,Mavridis L,Janes RW,Wallace BA|Nucleic Acids Res|2016
		Removed:

	'accessPoints' has been modified:
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			Other|https://pcddb.cryst.bbk.ac.uk/api/|PCDDB API
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			Other|https://pcddb.cryst.bbk.ac.uk/api/|PCDDB API
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	'tools' has been modified:
		Before:
			DichroWeb||http://dichroweb.cryst.bbk.ac.uk/
			ValiDichro||http://valispec.cryst.bbk.ac.uk/circularDichroism/ValiDichro/upload.html
			DichroMatch||http://dichromatch.cryst.bbk.ac.uk/
			2Struc||http://2struc.cryst.bbk.ac.uk/
			CreateRDS||http://createrds.cryst.bbk.ac.uk/
			CDTools||http://cdtools.cryst.bbk.ac.uk/
		After:
			DichroWeb||http://dichroweb.cryst.bbk.ac.uk/
			ValiDichro||http://valispec.cryst.bbk.ac.uk/circularDichroism/ValiDichro/upload.html
			DichroMatch||https://pcddb.cryst.bbk.ac.uk/dichromatch.php
			2StrucCompare||http://2struc.cryst.bbk.ac.uk/
			CDTools||http://cdtools.cryst.bbk.ac.uk/
		Added:
			DichroMatch||https://pcddb.cryst.bbk.ac.uk/dichromatch.php
			2StrucCompare||http://2struc.cryst.bbk.ac.uk/
		Removed:
			DichroMatch||http://dichromatch.cryst.bbk.ac.uk/
			2Struc||http://2struc.cryst.bbk.ac.uk/
			CreateRDS||http://createrds.cryst.bbk.ac.uk/

In Collections

Bioschemas

Data Citation Implementation

Support

General

blog	News
support email	pcddb@mail.cryst.bbk.ac.uk
help	https://pcddb.cryst.bbk.ac.uk/help.php
online documentation	Youtube
online documentation	Glossary
twitter	@pcddb

Additional Information

Contact

Bonnie A. Wallace ORCID

Tools

DichroWeb	http://dichroweb.cryst.bbk.ac.uk/
ValiDichro	http://valispec.cryst.bbk.ac.uk/circularDichroism/ValiDichro/upload.ht ...
DichroMatch	https://pcddb.cryst.bbk.ac.uk/dichromatch.php
2StrucCompare	http://2struc.cryst.bbk.ac.uk/
CDTools	http://cdtools.cryst.bbk.ac.uk/

Access / Retrieve Data

Conditions of Use

Applies to: Data use

PCDDB Terms and Conditions of use

Data Curation

Deposit

https://pcddb.cryst.bbk.ac.uk/

Data Access

Browse & search	https://pcddb.cryst.bbk.ac.uk/search.php?st1=IDNameAlts&q=
Download	https://pcddb.cryst.bbk.ac.uk/download.php

Other Web Services

PCDDB API

https://pcddb.cryst.bbk.ac.uk/api/

Publications

PCDDB: the Protein Circular Dichroism Data Bank, a repository for circular dichroism spectral and metadata.

Whitmore L, Woollett B, Miles AJ, Klose DP, Janes RW, Wallace BA.
Nucleic Acids Research 2011

View Paper (PubMed) View Publication

Circular dichroism spectral data and metadata in the Protein Circular Dichroism Data Bank (PCDDB): a tutorial guide to accession and deposition.

Janes RW, Miles AJ, Woollett B, Whitmore L, Klose D, Wallace BA.
Chirality 2012

View Paper (PubMed) View Publication

PCDDB: the Protein Circular Dichroism Data Bank, a repository for circular dichroism spectral and metadata.

Whitmore L,Woollett B,Miles AJ,Klose DP,Janes RW,Wallace BA
Nucleic Acids Res 2010

View Paper (PubMed) View Publication

PCDDB: new developments at the Protein Circular Dichroism Data Bank.

Whitmore L,Miles AJ,Mavridis L,Janes RW,Wallace BA
Nucleic Acids Res 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Bioschemas

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

Credit

Record Maintainer

This record is maintained by pcddb

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
International Union of Pure and Applied Chemistry (IUPAC) (Publisher)

Maintains

Grant Number(s)

2010-033-2-024 (International Union of Pure and Applied Chemistry (IUPAC))
F010346 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
F010362 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
G023476 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
I023887 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
J019135 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
J019194 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

Protein Circular Dichroism Data Bank

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