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cBioPortal for Cancer Genomics

Abbreviation:cBioPortal

General Information

The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.

Homepage http://www.cbioportal.org

Countries that developed this resource United States

Created in 2012

Taxonomic range

Homo sapiens

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: cBioPortal; cBioPortal for Cancer Genomics; DOI: https://doi.org/10.25504/FAIRsharing.6L6MjA; Last edited: Jan. 9, 2019, 3:06 p.m.; Last accessed: Sep 16 2021 10:56 p.m.

Publication for citation The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cerami E,Gao J,Dogrusoz U,Gross BE,Sumer SO,Aksoy BA,Jacobsen A,Byrne CJ,Heuer ML,Larsson E,Antipin Y,Reva B,Goldberg AP,Sander C,Schultz N; Cancer Discov ; 2012; 10.1158/2159-8290.CD-12-0095;

This record is maintained by keesvanbochove ORCID

Record added: May 15, 2018, 4:53 p.m.
Record updated: Oct. 17, 2018, 2:02 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.6L6MjA' by 'The FAIRsharing Team' at 14:02, 17 Oct 2018 (approved):

	'supportLinks' has been modified:
		Before:
			help|https://thehyve.nl
			mailing list|cbioportal@googlegroups.com
			training|http://www.cbioportal.org/tutorial.jsp
		After:
			FAQ|http://www.cbioportal.org/faq.jsp
			blog|http://www.cbioportal.org/news.jsp
			help|https://thehyve.nl
			mailing list|cbioportal@googlegroups.com
			online documentation|https://github.com/cBioPortal/cbioportal
			training|http://www.cbioportal.org/tutorial.jsp
			twitter|@cbioportal
		Added:
			FAQ|http://www.cbioportal.org/faq.jsp
			blog|http://www.cbioportal.org/news.jsp
			online documentation|https://github.com/cBioPortal/cbioportal
			twitter|@cbioportal
		Removed:

	'tools' has been modified:
		Before:
			cBioPortal||https://github.com/cBioPortal/cbioportal
			cBioPortal Importer||https://github.com/cBioPortal/cbioportal/tree/master/core/src/main/scripts/importer
		After:
			OncoPrinter||http://www.cbioportal.org/oncoprinter.jsp
			cBioPortal Importer||https://github.com/cBioPortal/cbioportal/tree/master/core/src/main/scripts/importer
			MutationMapper||http://www.cbioportal.org/mutation_mapper.jsp
		Added:
			OncoPrinter||http://www.cbioportal.org/oncoprinter.jsp
			MutationMapper||http://www.cbioportal.org/mutation_mapper.jsp
		Removed:
			cBioPortal||https://github.com/cBioPortal/cbioportal

	'publications' has been modified:
		Before:
			The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.|Cerami E,Gao J,Dogrusoz U,Gross BE,Sumer SO,Aksoy BA,Jacobsen A,Byrne CJ,Heuer ML,Larsson E,Antipin Y,Reva B,Goldberg AP,Sander C,Schultz N|Cancer Discov|2012
		After:
			The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.|Cerami E,Gao J,Dogrusoz U,Gross BE,Sumer SO,Aksoy BA,Jacobsen A,Byrne CJ,Heuer ML,Larsson E,Antipin Y,Reva B,Goldberg AP,Sander C,Schultz N|Cancer Discov|2012
			Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.|Gao J,Aksoy BA,Dogrusoz U,Dresdner G,Gross B,Sumer SO,Sun Y,Jacobsen A,Sinha R,Larsson E,Cerami E,Sander C,Schultz N|Sci Signal|2013
		Added:
			Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.|Gao J,Aksoy BA,Dogrusoz U,Dresdner G,Gross B,Sumer SO,Sun Y,Jacobsen A,Sinha R,Larsson E,Cerami E,Sander C,Schultz N|Sci Signal|2013
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.6L6MjA' by 'The FAIRsharing Team' at 09:11, 16 May 2018 (approved):

	'deprecation_reason' has been modified:
		Before: None
		After: None

Edits to 'https://fairsharing.org/FAIRsharing.6L6MjA' by 'keesvanbochove' at 17:11, 15 May 2018 (approved):

	'supportLinks' has been modified:
		Before:
			cbioportal@googlegroups.com
		After:
			cbioportal@googlegroups.com
			http://www.cbioportal.org/tutorial.jsp
			https://thehyve.nl
		Added:
			http://www.cbioportal.org/tutorial.jsp
			https://thehyve.nl
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.6L6MjA' by 'keesvanbochove' at 17:02, 15 May 2018 (approved):

	'contactName' has been modified:
		Before:
				cBioPortal for Cancer Genomics Discussion Group
		After:
			cBioPortal for Cancer Genomics Discussion Group
		Added:
		Removed:

Support

General

FAQ	cBioPortal FAQ
blog	cBioPortal News
help	Commercial support for cBioPortal
Mailing List	cBioPortal for Cancer Genomics Discussion Group
online documentation	GitHub Repository
training	cBioPortal tutorials
twitter	@cbioportal

Additional Information

Contact

cBioPortal for Cancer Genomics Discussion Group

Tools

cBioPortal Importer	https://github.com/cBioPortal/cbioportal/tree/master/core/src/main/scr ...
OncoPrinter	http://www.cbioportal.org/oncoprinter.jsp
MutationMapper	http://www.cbioportal.org/mutation_mapper.jsp

Access / Retrieve Data

Conditions of Use

Applies to: Data use

GNU Affero General Public License

Applies to: Database software

cBioPortal GNU Affero General Public License

Data Curation

Documentation on loading data into cBioPortal	https://cbioportal.readthedocs.io/en/latest/
Datahub: a centralized location for storing curated data ready for inclusion in cBioPortal.	https://github.com/cBioPortal/datahub

REST Web Services

REST Endpoint for querying cBioPortal data

http://cbioportal.org/api

Publications

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.

Cerami E,Gao J,Dogrusoz U,Gross BE,Sumer SO,Aksoy BA,Jacobsen A,Byrne CJ,Heuer ML,Larsson E,Antipin Y,Reva B,Goldberg AP,Sander C,Schultz N
Cancer Discov 2012

View Paper (PubMed) View Publication

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

Gao J,Aksoy BA,Dogrusoz U,Dresdner G,Gross B,Sumer SO,Sun Y,Jacobsen A,Sinha R,Larsson E,Cerami E,Sander C,Schultz N
Sci Signal 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by keesvanbochove ORCID

Maintains

Computational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY, USA (Lab)
cBio Center at the Dana-Farber Cancer Institute and at Harvard Medical School, Boston, USA (Lab)
Princess Margaret Cancer Centre, Toronto, Canada (University)
Children's Hospital of Philadelphia (University)
The Hyve (Company)

cBioPortal for Cancer Genomics

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