ImMunoGeneTics Ontology

Abbreviation: IMGT

General Information

IMGT-ONTOLOGY provides a specific vocabulary of the terminology to be used in immunogenetics and immunoinformatics. The ontology allows for the standardization for immunogenetics data from genome, proteome, genetics, two-dimensional and three-dimensional structures.

Homepage http://imgt.org/IMGTindex/ontology.php

Countries that developed this resource France

Created in 1995

Taxonomic range

Homo sapiens

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: IMGT; ImMunoGeneTics Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6brn4p; Last edited: Nov. 19, 2020, 1:19 p.m.; Last accessed: Dec 02 2020 7 p.m.

Record updated: Nov. 19, 2020, 1:16 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.6brn4p' by 'The FAIRsharing Team' at 13:16, 19 Nov 2020 (approved):

	'supportLinks' has been modified:
		Before:
			FAQ|http://www.imgt.org/FAQ/
			online documentation|http://www.imgt.org/IMGTindex/ontology.php
		After:
		Added:
		Removed:
			FAQ|http://www.imgt.org/FAQ/
			online documentation|http://www.imgt.org/IMGTindex/ontology.php

	'licences' has been modified:
		Before:
		After:
			Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)|https://creativecommons.org/licenses/by-nc-nd/4.0/|Data
			IMGT Terms of Use|http://imgt.org/about/termsofuse.php|Data
		Added:
			Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)|https://creativecommons.org/licenses/by-nc-nd/4.0/|Data
			IMGT Terms of Use|http://imgt.org/about/termsofuse.php|Data
		Removed:

	'onto_domains' has been modified:
		Before:
			biological_process
			immunoglobulin complex
			immunoglobulin complex, circulating
			proteome
			structure
		After:
			Structure
			biological_process
			cellular_component
			immunoglobulin complex
			immunoglobulin complex, circulating
			proteome
			structure
		Added:
			Structure
			cellular_component
		Removed:

	'dataProcesses' has been modified:
		Before:
			Download, data access, http://www.imgt.org/download/IMGT-ONTOLOGY/
		After:
			Download (OWL), data release, http://imgt.org/download/IMGT-ONTOLOGY/
		Added:
			Download (OWL), data release, http://imgt.org/download/IMGT-ONTOLOGY/
		Removed:
			Download, data access, http://www.imgt.org/download/IMGT-ONTOLOGY/

	'related_standards' has been modified:
		Before:
		After:
			Sequence Ontology
			Gene Ontology
		Added:
			Sequence Ontology
			Gene Ontology
		Removed:

	'publications' has been modified:
		Before:
			Ontology for immunogenetics: the IMGT-ONTOLOGY.|Giudicelli V, Lefranc MP|Bioinformatics|2000
		After:
			IMGT-ONTOLOGY 2012.|Giudicelli V,Lefranc MP|Front Genet|2012
			Ontology for immunogenetics: the IMGT-ONTOLOGY.|Giudicelli V,Lefranc MP|Bioinformatics|2000
			Immunoglobulin and T Cell Receptor Genes: IMGT((R)) and the Birth and Rise of Immunoinformatics.|Lefranc MP|Front Immunol|2014
		Added:
			IMGT-ONTOLOGY 2012.|Giudicelli V,Lefranc MP|Front Genet|2012
			Ontology for immunogenetics: the IMGT-ONTOLOGY.|Giudicelli V,Lefranc MP|Bioinformatics|2000
			Immunoglobulin and T Cell Receptor Genes: IMGT((R)) and the Birth and Rise of Immunoinformatics.|Lefranc MP|Front Immunol|2014
		Removed:
			Ontology for immunogenetics: the IMGT-ONTOLOGY.|Giudicelli V, Lefranc MP|Bioinformatics|2000

	'homepage' has been modified:
		Before: http://bioportal.bioontology.org/ontologies/1491
		After: http://imgt.org/IMGTindex/ontology.php

Edits to 'https://fairsharing.org/FAIRsharing.6brn4p' by 'The FAIRsharing Team' at 18:10, 28 Nov 2019 (approved):

	'supportLinks' has been modified:
		Before:
			FAQ|http://www.imgt.org/FAQ/
		After:
			FAQ|http://www.imgt.org/FAQ/
			online documentation|http://www.imgt.org/IMGTindex/ontology.php
		Added:
			online documentation|http://www.imgt.org/IMGTindex/ontology.php
		Removed:

	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-2258-468X

	'onto_disciplines' has been modified:
		Before:
			Biomedical Science
			Genetics
			Immunology
			Life Science
		After:
			Biomedical Science
			Genetics
			Immunology
			Life Science
			Ontology and Terminology
		Added:
			Ontology and Terminology
		Removed:

	'dataProcesses' has been modified:
		Before:
		After:
			Download
		Added:
			Download
		Removed:

	'miriam_id' has been modified:
		Before: None
		After: 

	'publications' has been modified:
		Before:
			Ontology for immunogenetics: the IMGT-ONTOLOGY.|Giudicelli V,Lefranc MP|Bioinformatics|2000
		After:
			Ontology for immunogenetics: the IMGT-ONTOLOGY.|Giudicelli V, Lefranc MP|Bioinformatics|2000
		Added:
			Ontology for immunogenetics: the IMGT-ONTOLOGY.|Giudicelli V, Lefranc MP|Bioinformatics|2000
		Removed:
			Ontology for immunogenetics: the IMGT-ONTOLOGY.|Giudicelli V,Lefranc MP|Bioinformatics|2000

Edits to 'https://fairsharing.org/FAIRsharing.6brn4p' by 'The FAIRsharing Team' at 14:37, 01 Nov 2016 (approved):

	'name' has been modified:
		Before: IMGT-ONTOLOGY
		After: ImMunoGeneTics Ontology

Support

No support information provided.

Additional Information

Contact

Véronique Giudicelli ORCID

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/IMGT-ONTOLOGY

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Download (OWL)

http://imgt.org/download/IMGT-ONTOLOGY/

Publications

IMGT-ONTOLOGY 2012.

Giudicelli V,Lefranc MP
Front Genet 2012

View Paper (PubMed) View Publication

Ontology for immunogenetics: the IMGT-ONTOLOGY.

Giudicelli V,Lefranc MP
Bioinformatics 2000

View Paper (PubMed) View Publication

Immunoglobulin and T Cell Receptor Genes: IMGT((R)) and the Birth and Rise of Immunoinformatics.

Lefranc MP
Front Immunol 2014

View Paper (PubMed) View Publication

IMGT-ONTOLOGY Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (1)

ImMunoGeneTics Information System
IMGT is a high-quality integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility complex (MHC) of human and other vertebrate species, and in the immunoglobulin superfamily (IgSF), major histocompatibility complex superfamily (MhcSF) and related proteins of the immune system (RPI) of vertebrates and invertebrates.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Funds

European Commission (Government body)
University of Montpellier, France (University)

Maintains

National Centre for Scientific Research (CNRS), Paris, France (Research institute)
International ImMunoGeneTics information system (IMGT), Montpellier, France (Government body)

ImMunoGeneTics Ontology

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