Experimental data repository for KInetic MOdels of biological SYStems

Abbreviation:KiMoSys

Recommended

General Information

KiMoSys is a user-friendly platform that includes a public data repository of relevant published measurements, including metabolite concentrations (time-series and steady-state), flux data, and enzyme measurements in order to build ODE-based kinetic model. It is designed to search, exchange and disseminate experimental data (and associated kinetic models) for the systems modeling community.

Homepage http://www.kimosys.org

Countries that developed this resource Portugal

Created in 2013

Taxonomic range

All

Knowledge Domains

Subjects

User-defined Tags

Fluxomics

In the following recommendations:

How to cite this record FAIRsharing.org: KiMoSys; Experimental data repository for KInetic MOdels of biological SYStems; DOI: https://doi.org/10.25504/FAIRsharing.6erywc; Last edited: March 19, 2021, 11:51 a.m.; Last accessed: Apr 11 2021 2:22 a.m.

This record is maintained by KiMoSys

Record updated: March 8, 2021, 11:41 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.6erywc' by 'The FAIRsharing Team' at 11:41, 08 Mar 2021 (approved):

	'organizations' has been modified:
		Before:
			INESC-ID ? Instituto de Engenharia de Sistemas e Computadores, Investiga??o e Desenvolvimento em Lisboa|http://inesc-id.pt/|Maintains
		After:
			Instituto de Engenharia de Sistemas e Computadores, Investigao e Desenvolvimento em Lisboa (INESC-ID), Lisboa, Portugal|https://www.inesc-id.pt/|Maintains
			Fundao para a Cincia e a Tecnologia (FCT), Portugal|http://fct.pt|Funds
			European Union Framework Program 7 "BacHBerry"|http://www.bachberry.eu/|Funds
			Associate Laboratory for Green Chemistry - LAQV, Caparica, Portugal|https://www.fct.unl.pt/en/research/associated-lab-green-chemistry-clean-technologies-and-processes#:~:text=LAQV%20%CC%81s%20mission%20is%20to,production%20and%20uses%20of%20Chemicals.|Funds
		Added:
			Instituto de Engenharia de Sistemas e Computadores, Investigao e Desenvolvimento em Lisboa (INESC-ID), Lisboa, Portugal|https://www.inesc-id.pt/|Maintains
			Fundao para a Cincia e a Tecnologia (FCT), Portugal|http://fct.pt|Funds
			European Union Framework Program 7 "BacHBerry"|http://www.bachberry.eu/|Funds
			Associate Laboratory for Green Chemistry - LAQV, Caparica, Portugal|https://www.fct.unl.pt/en/research/associated-lab-green-chemistry-clean-technologies-and-processes#:~:text=LAQV%20%CC%81s%20mission%20is%20to,production%20and%20uses%20of%20Chemicals.|Funds
		Removed:
			INESC-ID ? Instituto de Engenharia de Sistemas e Computadores, Investiga??o e Desenvolvimento em Lisboa|http://inesc-id.pt/|Maintains

	'grants' has been modified:
		Before:
		After:
			CEECIND/01399/2017
			FCT/MCTES (UIDB/50006/2020) 
			FP7-613793
			LAETA Pest-OE/EME/LA0022
			Pest-OE/EEI/LA0021/2013
			PneumoSys (PTDC/SAU-MII/100964/2008) 
		Added:
			CEECIND/01399/2017
			FCT/MCTES (UIDB/50006/2020) 
			FP7-613793
			LAETA Pest-OE/EME/LA0022
			Pest-OE/EEI/LA0021/2013
			PneumoSys (PTDC/SAU-MII/100964/2008) 
		Removed:

	'tools' has been modified:
		Before:
		After:
			Kimosys tools||https://www.kimosys.org/dynamic/tools
		Added:
			Kimosys tools||https://www.kimosys.org/dynamic/tools
		Removed:

	'publications' has been modified:
		Before:
			KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems|R.S. Costa, A. Verissimo, S. Vinga|BMC Systems Biology|2014
		After:
			KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems|R.S. Costa, A. Verissimo, S. Vinga|BMC Systems Biology|2014
			KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling.|Mochao H,Barahona P,Costa RS|Database (Oxford)|2020
		Added:
			KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling.|Mochao H,Barahona P,Costa RS|Database (Oxford)|2020
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.6erywc' by 'The FAIRsharing Team' at 16:01, 19 Dec 2019 (approved):

	'organizations' has been modified:
		Before:
		After:
			INESC-ID  Instituto de Engenharia de Sistemas e Computadores, Investigao e Desenvolvimento em Lisboa|http://inesc-id.pt/|Maintains
		Added:
			INESC-ID  Instituto de Engenharia de Sistemas e Computadores, Investigao e Desenvolvimento em Lisboa|http://inesc-id.pt/|Maintains
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.6erywc' by 'The FAIRsharing Team' at 13:56, 19 Dec 2019 (approved):

	'contactEmail' has been modified:
		Before: kimosys@kdbio.inesc-id.pt
		After: rcosta@kdbio.inesc-id.pt

	'miriam_id' has been modified:
		Before: None
		After: 

	'contact' has been modified:
		Before: 
		After: Rafael S Costa

	'tools' has been modified:
		Before:
			Search||http://www.kimosys.org/repository#search
			Submit||http://www.kimosys.org/repository#contribute
		After:
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		Removed:
			Search||http://www.kimosys.org/repository#search
			Submit||http://www.kimosys.org/repository#contribute

	'dataProcesses' has been modified:
		Before:
		After:
			submit
			search
			register / login
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			submit
			search
			register / login
		Removed:

In Collections

Data Citation Implementation

Support

General

support email	kimosys@kdbio.inesc-id.pt
online documentation	http://www.kimosys.org/documentation
twitter	@KiMoSys_

Additional Information

Contact

Rafael S Costa

Tools

Kimosys tools

https://www.kimosys.org/dynamic/tools

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Applies to: General

GNU General Public License (GPL) 2.0

Data Curation

submit

http://www.kimosys.org/repository#contribute

Data Access

search	http://www.kimosys.org/repository#search
register / login	https://www.kimosys.org/users/sign_up

Publications

KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems

R.S. Costa, A. Verissimo, S. Vinga
BMC Systems Biology 2014

View Paper (PubMed) View Publication

KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling.

Mochao H,Barahona P,Costa RS
Database (Oxford) 2020

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

No related databases defined

Implementing Policies

Credit

Record Maintainer

This record is maintained by KiMoSys

Funds

Maintains

Instituto de Engenharia de Sistemas e Computadores, Investigação e Desenvolvimento em Lisboa (INESC-ID), Lisboa, Portugal (Research institute)

Grant Number(s)

CEECIND/01399/2017 (Associate Laboratory for Green Chemistry - LAQV, Caparica, Portugal)
FCT/MCTES (UIDB/50006/2020) (Associate Laboratory for Green Chemistry - LAQV, Caparica, Portugal)
FP7-613793 (European Union Framework Program 7 "BacHBerry")
LAETA Pest-OE/EME/LA0022 (Fundação para a Ciência e a Tecnologia (FCT), Portugal)
Pest-OE/EEI/LA0021/2013 (Fundação para a Ciência e a Tecnologia (FCT), Portugal)
PneumoSys (PTDC/SAU-MII/100964/2008) (Fundação para a Ciência e a Tecnologia (FCT), Portugal)

Experimental data repository for KInetic MOdels of biological SYStems

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