standards > model/format > DOI:10.25504/FAIRsharing.6f7m6j
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ready Simulation Experiment Description Markup Language

Abbreviation: SED-ML


General Information
SED-ML is an XML-based format for encoding simulation setups, to ensure exchangeability and reproducibility of simulation experiments. It follows the requirements defined in the MIASE guidelines. SED-ML encodes in a computer-readable exchange format the information required by MIASE to enable reproduction of simulation experiments. It has been developed as a community project and it is defined in a detailed technical specification and additionally provides an XML schema.

Homepage http://sed-ml.org/

Countries that developed this resource Worldwide

Created in 2008

Taxonomic range




How to cite this record FAIRsharing.org: SED-ML; Simulation Experiment Description Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.6f7m6j; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Sep 22 2020 2:06 a.m.


This record is maintained by dwaltemath  ORCID

Record updated: March 15, 2018, 10:21 a.m. by The FAIRsharing Team.

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In Collections
Computational Modeling (COMBINE)
Computational Modeling
FAIRDOM Community Standards
The NormSys Registry for Modeling Standards
Systems Medicine


Support

General

help http://sed-ml.sourceforge.net/documents. ...
Mailing List None
online documentation http://sed-ml.sourceforge.net/documents/ ...
online documentation http://sed-ml.org/documents/sed-ml-L1V1. ...

Additional Information

Contact SED-ML Editors


Schemas
  • Name: SEDML-L1
  • Version: 3
Download
  • Name: SEDML-L1
  • Version: 2
Download
  • Name: SEDML-L1
  • Version: 1
Download

Access / Retrieve Data

Conditions of Use





Publications

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language.

Waltemath D,Adams R,Bergmann FT,Hucka M,Kolpakov F,Miller AK,Moraru II,Nickerson D,Sahle S,Snoep JL,Le Novere N
BMC Syst Biol 2011

View Paper (PubMed) View Publication

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2.

Bergmann FT,Cooper J,Le Novere N,Nickerson D,Waltemath D
J Integr Bioinform 2015

View Paper (PubMed) View Publication


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JWS Online
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Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • 031 6194 (Bundesministerium fur Bildung und Forschung (BMBF), Germany)

  • BB/D019621/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

  • DFG Research Training Group 1387/1 (Deutsche Forschungsgemeinschaft)

  • GM070923 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)

  • GM081070 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)

  • P41-RR013186 (U.S. National Library of Medicine)

  • U54-RR022232 (U.S. National Library of Medicine)