Simulation Experiment Description Markup Language
Abbreviation: SED-ML
Homepage http://sed-ml.org/
Countries that developed this resource Worldwide
Created in 2008
Taxonomic range
Knowledge Domains
Subjects
How to cite this record FAIRsharing.org: SED-ML; Simulation Experiment Description Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.6f7m6j; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Mar 08 2021 9:09 a.m.
Record updated: March 15, 2018, 10:21 a.m. by The FAIRsharing Team.
help | http://sed-ml.sourceforge.net/documents. ... |
Mailing List | None |
online documentation | http://sed-ml.sourceforge.net/documents/ ... |
online documentation | http://sed-ml.org/documents/sed-ml-L1V1. ... |
Additional Information
Contact | SED-ML Editors |
CellDesigner | http://celldesigner.org/ | 4.4.1 |
SED-ML Script Editor | http://libsedml.sourceforge.net/libSedML/SedMLScript.html | |
SED-ML Web Tools | http://sysbioapps.dyndns.org/SED-ML_Web_Tools | |
SED-ED | http://sourceforge.net/projects/jlibsedml/files | 2.2.3 |
SBW Simulation Tool | https://sourceforge.net/p/sbwsimtool/wiki/Home/ | |
clibsedml | http://sourceforge.net/projects/clibsedml/ | |
jlibsedml | http://sourceforge.net/projects/jlibsedml/ | |
libSedML | http://libsedml.sf.net/ | |
Systems Biology Simulation Core Library | http://sourceforge.net/projects/simulation-core/ |
Conditions of Use
Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language.
Waltemath D,Adams R,Bergmann FT,Hucka M,Kolpakov F,Miller AK,Moraru II,Nickerson D,Sahle S,Snoep JL,Le Novere N
BMC Syst Biol 2011
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2.
Bergmann FT,Cooper J,Le Novere N,Nickerson D,Waltemath D
J Integr Bioinform 2015
Reporting Guidelines
Terminology Artifacts
Models and Formats
Identifier Schemas
No identifier schema standards defined
Metrics
No metrics standards defined
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WholeCellSimDB
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Physiome Model Repository
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JWS Online
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BioSimulators
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BioSimulations
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This record is not implemented by any policy.
Record Maintainer
This record is maintained by dwaltemath ORCID
Funds
Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)
Bundesministerium fur Bildung und Forschung (BMBF), Germany (Government body)
Deutsche Forschungsgemeinschaft (DFG) (Government body)
Marie Skodowska-Curie actions, Europe (Government body)
Maurice Wilkins Center for Molecular Biodiscovery, Auckland, New Zealand (Government body)
U.S. National Library of Medicine (Government body)
National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA (Government body)
Maintains
COmputational Modeling in BIology NEtwork (COMBINE) (Consortium)
SED-ML editors (Consortium)
Grant Number(s)
031 6194 (Bundesministerium fur Bildung und Forschung (BMBF), Germany)
BB/D019621/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
DFG Research Training Group 1387/1 (Deutsche Forschungsgemeinschaft (DFG))
GM070923 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
GM081070 (National Institute of General Medical Sciences (NIGMS), Bethesda, MD, USA)
P41-RR013186 (U.S. National Library of Medicine)
U54-RR022232 (U.S. National Library of Medicine)