databases > DOI:10.25504/FAIRsharing.6ktmmc

ready Dfam

General Information
The Dfam database is a collection of Repetitive DNA element sequence alignments, hidden Markov models (HMMs) and matches lists for complete Eukaryote genomes. Dfam represents a collection of alignments and HMMs of such transposable elements and other repetitive DNA elements. The Dfam website gives information about each model, and provides genome annotations for a collection of core genomes. The models may also be downloaded from the ftp site, for example to mask repeats in new genomes.

Homepage http://dfam.org/

Countries that developed this resource United States

Created in 2012

Subjects 





How to cite this record FAIRsharing.org: Dfam; Dfam; DOI: https://doi.org/10.25504/FAIRsharing.6ktmmc; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: May 27 2019 8:22 a.m.


Record updated: Dec. 4, 2016, 11:02 p.m. by The FAIRsharing Team.

Show edit history




Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Data download http://dfam.org/web_download/



Publications

The Dfam database of repetitive DNA families.

Hubley R,Finn RD,Clements J,Eddy SR,Jones TA,Bao W,Smit AF,Wheeler TJ
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Funds

Maintains

Undefined

Grant Number(s)

  • P41LM006252 (National Institutes of Health (NIH), Bethesda, MD, USA)