databases > DOI:10.25504/FAIRsharing.6ktmmc

ready Dfam

General Information
The Dfam database is a collection of Repetitive DNA element sequence alignments, hidden Markov models (HMMs) and matches lists for complete Eukaryote genomes. Dfam represents a collection of alignments and HMMs of such transposable elements and other repetitive DNA elements. The Dfam website gives information about each model, and provides genome annotations for a collection of core genomes. The models may also be downloaded from the ftp site, for example to mask repeats in new genomes.

Homepage http://dfam.org/

Developed in United States

Created in 2012






How to cite this record FAIRsharing.org: Dfam; Dfam; DOI: https://doi.org/10.25504/FAIRsharing.6ktmmc; Last edited: Feb. 22, 2018, 2:45 p.m.; Last accessed: Sep 26 2018 9:41 a.m.


Record updated: Dec. 4, 2016, 11:02 p.m. by The FAIRsharing Team.

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Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Access

Data download http://dfam.org/web_download/



Publications

The Dfam database of repetitive DNA families.

Hubley R,Finn RD,Clements J,Eddy SR,Jones TA,Bao W,Smit AF,Wheeler TJ
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

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Grant Number(s)

  • P41LM006252 (US National Institutes of Health (NIH))