How to cite this record
FAIRsharing.org: Dfam; Dfam; DOI: https://doi.org/10.25504/FAIRsharing.6ktmmc;
Last edited: Feb. 25, 2020, 1:14 p.m.; Last accessed: Oct 23 2020 12:17 p.m.
Publication for citation
The Dfam database of repetitive DNA families.
Hubley R,Finn RD,Clements J,Eddy SR,Jones TA,Bao W,Smit AF,Wheeler TJ; Nucleic Acids Res ;
2015;
10.1093/nar/gkv1272;
Edits to 'https://fairsharing.org/FAIRsharing.6ktmmc' by 'The FAIRsharing Team' at 13:14, 25 Feb 2020 (approved):
'organizations' has been modified:
Before:
Harvard University, Cambridge, MA, USA|http://www.harvard.edu|Maintains
University of Montana, USA|http://www.cs.umt.edu/|Maintains
National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
Howard Hughes Medical Institute|https://www.hhmi.org/|Maintains
Institute for Systems Biology (ISB), Seattle, WA, USA|https://www.systemsbiology.org|Maintains
After:
National Institutes of Health (NIH), Bethesda, MD, USA|http://www.nih.gov|Funds
Harvard University, Cambridge, MA, USA|http://www.harvard.edu|Maintains
University of Montana, USA|http://www.cs.umt.edu/|Maintains
Howard Hughes Medical Institute|https://www.hhmi.org/|Maintains
Institute for Systems Biology (ISB), Seattle, WA, USA|https://www.systemsbiology.org|Maintains
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Added:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Funds
Removed:
European Commission under FP7 Grant Agreement|http://ec.europa.eu/research/fp7/index_en.cfm?pg=documents|Undefined
'supportLinks' has been modified:
Before:
help|https://xfam.wordpress.com/2015/10/30/meet-dfam2-0/
help|http://dfam.org/help/model
After:
help|https://www.dfam.org/help/family
online documentation|https://www.dfam.org/about
online documentation|https://www.dfam.org/classification
Added:
help|https://www.dfam.org/help/family
online documentation|https://www.dfam.org/about
online documentation|https://www.dfam.org/classification
Removed:
help|https://xfam.wordpress.com/2015/10/30/meet-dfam2-0/
help|http://dfam.org/help/model
'description' has been modified:
Before: The Dfam database is a collection of Repetitive DNA element sequence alignments, hidden Markov models (HMMs) and matches lists for complete Eukaryote genomes. Dfam represents a collection of alignments and HMMs of such transposable elements and other repetitive DNA elements. The Dfam website gives information about each model, and provides genome annotations for a collection of core genomes. The models may also be downloaded from the ftp site, for example to mask repeats in new genomes.
After: The Dfam database is a open collection of DNA Transposable Element sequence alignments, hidden Markov Models (HMMs), consensus sequences, and genome annotations. Dfam represents a collection of multiple sequence alignments, each containing a set of representative members of a specific transposable element family. These alignments (seed alignments) are used to generate HMMs and consensus sequences for each family. The Dfam website gives information about each family, and provides genome annotations for a collection of core genomes.
'onto_disciplines' has been modified:
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Life Science
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Genomics
Added:
Genomics
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Life Science
'dataProcesses' has been modified:
Before:
Data download
After:
Download
Search
Browse
Raw Dataset Repository
Added:
Download
Search
Browse
Raw Dataset Repository
Removed:
Data download
'miriam_id' has been modified:
Before: None
After:
'onto_domains' has been modified:
Before:
Annotation
DNA sequence
Hidden Markov model
genome
transposable_element
After:
Annotation
DNA sequence
Genome annotation
Hidden Markov model
Multiple sequence alignment
genome
transposable_element
Added:
Genome annotation
Multiple sequence alignment
Removed:
'tools' has been modified:
Before:
Browse||http://dfam.org/browse
Search||http://dfam.org/search
After:
Added:
Removed:
Browse||http://dfam.org/browse
Search||http://dfam.org/search
Edits to 'https://fairsharing.org/FAIRsharing.6ktmmc' by 'The FAIRsharing Team' at 23:02, 04 Dec 2016 (approved):
'shortname' has been modified:
Before: Dfam
After:
Dfam
