databases > DOI:10.25504/FAIRsharing.6ktmmc
Did we miss something? Our COVID-19 Collection is growing, but not yet complete. Tell us what's missing. Email contact@fairsharing.org or add missing resources to our spreadsheet

ready Dfam

General Information
The Dfam database is a open collection of DNA Transposable Element sequence alignments, hidden Markov Models (HMMs), consensus sequences, and genome annotations. Dfam represents a collection of multiple sequence alignments, each containing a set of representative members of a specific transposable element family. These alignments (seed alignments) are used to generate HMMs and consensus sequences for each family. The Dfam website gives information about each family, and provides genome annotations for a collection of core genomes.




How to cite this record FAIRsharing.org: Dfam; Dfam; DOI: https://doi.org/10.25504/FAIRsharing.6ktmmc; Last edited: Feb. 25, 2020, 1:14 p.m.; Last accessed: Aug 06 2020 10:57 a.m.

Publication for citation  The Dfam database of repetitive DNA families. Hubley R,Finn RD,Clements J,Eddy SR,Jones TA,Bao W,Smit AF,Wheeler TJ; Nucleic Acids Res ; 2015; 10.1093/nar/gkv1272;


This record is maintained by dfam_consortium

Record updated: Feb. 25, 2020, 1:14 p.m. by The FAIRsharing Team.

Show edit history


In Collections

Support

General

Additional Information


Tools

    No tools defined


Access / Retrieve Data


Publications

The Dfam database of repetitive DNA families.

Hubley R,Finn RD,Clements J,Eddy SR,Jones TA,Bao W,Smit AF,Wheeler TJ
Nucleic Acids Res 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined


Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • P41LM006252 (National Institutes of Health (NIH), Bethesda, MD, USA)