Protein-ligand interaction ontology

Abbreviation: PLIO

General Information

The protein--ligand interaction ontology (PLIO) was developed around three main concepts, namely target, ligand and interaction, and was enriched by adding synonyms, useful annotations and references. PLIO represents knowledge about the interaction of proteins and ligands (including drugs) and has a different scope and conceptual resolution than, for example, the molecular interaction ontology. An important feature of PLIO is that it links directly from an ontology framework describing protein–ligand interactions to the mathematical formulas relevant for the computation of some of the entities represented in the ontology.

Homepage https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads.html

Countries that developed this resource Germany

Created in 2011

Taxonomic range

All

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PLIO; Protein-ligand interaction ontology; DOI: https://doi.org/10.25504/FAIRsharing.6mmbzs; Last edited: Jan. 8, 2019, 1:35 p.m.; Last accessed: Jan 22 2021 10:16 p.m.

Record added: Oct. 24, 2017, 9:41 a.m.
Record updated: June 21, 2018, 1:52 p.m. by The FAIRsharing Team.

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Edits to 'https://fairsharing.org/FAIRsharing.6mmbzs' by 'The FAIRsharing Team' at 19:28, 17 Jan 2018 (approved):

	'organizations' has been modified:
		Before:
			Bonn-Aachen International Center for Information Technology (b-it)|Research institute|Maintains
		After:
			Bonn-Aachen International Center for Information Technology (b-it)|Research institute|Maintains
			University of Bonn|University|Maintains
			Department of Bioinformatics|Fraunhofer Institute for Algorithms and Scientific Computing|Research institute|Maintains
		Added:
			University of Bonn|University|Maintains
			Department of Bioinformatics|Fraunhofer Institute for Algorithms and Scientific Computing|Research institute|Maintains
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.6mmbzs' by 'The FAIRsharing Team' at 19:25, 17 Jan 2018 (approved):

	'homepage' has been modified:
		Before: http://bioportal.bioontology.org/ontologies/PLIO
		After: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads.html

Support

No support information provided.

Additional Information

Contact

Dr. Erfan Younesi

External Links

Bioportal

http://bioportal.bioontology.org/ontologies/PLIO

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Data Access

Download

https://www.scai.fraunhofer.de/content/dam/scai/de/downloads/bioinform ...

Publications

PLIO: an ontology for formal description of protein-ligand interactions.

Ivchenko O,Younesi E,Shahid M,Wolf A,Muller B,Hofmann-Apitius M
Bioinformatics 2011

View Paper (PubMed) View Publication

PLIO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Basic Formal Ontology

Models and Formats

Web Ontology Language

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (0)

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Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

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Maintains

Bonn-Aachen International Center for Information Technology (b-it) (Research institute)
University of Bonn, Germany (University)
Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing, Bonn-Aachen, Germany (Research institute)

Protein-ligand interaction ontology

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