standards > model/format > DOI:10.25504/FAIRsharing.6qrmz2


ready Pharmacometrics Markup Language

Abbreviation: PharmML


General Information
PharmML is an exchange format for non-linear mixed effect models used in pharmacometrics and provides means to encode models, trial designs, and modelling steps. This standard allows for a smooth exchange of models between different software tools used in population pharmacokinetics/pharmacodynamics.

Homepage http://www.pharmml.org

Developed in European Union

Created in 2011

Taxonomic range







How to cite this record FAIRsharing.org: PharmML; Pharmacometrics Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.6qrmz2; Last edited: March 15, 2018, 11:53 a.m.; Last accessed: Oct 19 2018 9:32 a.m.


This record is maintained by mjswat

Record added: Feb. 3, 2016, 11:35 a.m.
Record updated: March 15, 2018, 11:26 a.m. by The FAIRsharing Team.

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In Collections
Computational Modeling
FAIRDOM Community Standards
The NormSys Registry for Modeling Standards
Chemistry


Support

General

forum http://www.ddmore.eu/forum
online documentation http://www.pharmml.org/documentation2

Additional Information

Contact Maciej J Swat   ORCID

Tools
libPharmML http://www.pharmml.org/libpharmml 0.4.2
Infix notation to PharmML math online converter http://infix2pharmml.sourceforge.net/ 0.7
Simulx http://simulx.webpopix.org/
DDMoRe Model Repository http://repository.ddmore.eu/

Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

PharmML schema http://www.pharmml.org/downloads-1

Data Access

DDMoRe Model Repository http://repository.ddmore.eu/



Publications

Pharmacometrics Markup Language (PharmML): Opening New Perspectives for Model Exchange in Drug Development

Swat, M. J., Moodie, S., Wimalaratne, S. M., Kristensen, N. R., Lavielle, M., Mari, A., Magni, P., Smith, M. K., Bizzotto, R., Pasotti, L., Mezzalana, E., Comets, E., Sarr, C., Terranova, N., Blaudez, 5 E., Chan, P., Chard, J., Chatel, K., Chenel, M., Edwards, D., Franklin, C., Giorgino, T., Glont, M., Girard, P., Grenon, P., Harling, K., Hooker, A. C., Kaye, R., Keizer, R., Kloft, C., Kok, J. N., Kokash, N., Laibe, C., Laveille, C., Lestini, G., Mentr
CPT: Pharmacometrics & Systems Pharmacology 2015

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined


Implementing Databases (1)
Ontology and Knowledge Base of Probability Distributions
ProbOnto, is an ontology-based knowledge base of probability distributions, featuring more than 150 uni- and multivariate distributions with their defining functions, characteristics, relationships and re-parameterization formulas. It can be used for model annotation and facilitates the encoding of distribution-based models, related functions and quantities. ProbOnto is both an ontology and a knowledge base, however its primary focus is the knowledge base.

Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is maintained by mjswat

Funds

Maintains

Grant Number(s)

  • 115156 (Innovative Medicines Initiative (IMI), Europe)