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Plant Experimental Condition Ontology

Abbreviation: PECO

General Information

PECO is a structured, controlled vocabulary for the representation of plant experimental conditions. It describes the treatments, growing conditions, and/or study types used in various types of plant biology experiments.

This record replaces or incorporates the following deprecated resources:

Plant Environmental Ontology

Homepage https://github.com/Planteome/plant-experimental-conditions-ontology

Countries that developed this resource United States

Created in 2013

Taxonomic range

Plantae

Knowledge Domains

Subjects

User-defined Tags

Experimental condition

How to cite this record FAIRsharing.org: PECO; Plant Experimental Condition Ontology; DOI: https://doi.org/10.25504/FAIRsharing.6yNXYK; Last edited: Feb. 7, 2021, 7:57 p.m.; Last accessed: Oct 27 2021 12:49 a.m.

This record is maintained by cooperl09

Record added: Feb. 14, 2019, 1:28 p.m.
Record updated: Feb. 6, 2021, 10:04 a.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.6yNXYK' by 'The FAIRsharing Team' at 10:04, 06 Feb 2021 (approved):

	'user_defined_tags' has been modified:
		Before:
		After:
			Experimental condition
		Added:
			Experimental condition
		Removed:

	'onto_domains' has been modified:
		Before:
			Experiment report
			study design
		After:
			Experimental measurement
			experimentally_determined
			study design
		Added:
			Experimental measurement
			experimentally_determined
		Removed:
			Experiment report

Edits to 'https://fairsharing.org/FAIRsharing.6yNXYK' by 'The FAIRsharing Team' at 15:38, 29 Jan 2020 (approved):

	'supportLinks' has been modified:
		Before:
			forum|https://github.com/Planteome/plant-experimental-conditions-ontology/issues
			online documentation|https://github.com/Planteome/plant-experimental-conditions-ontology
		After:
			forum|https://github.com/Planteome/plant-experimental-conditions-ontology/issues
		Added:
		Removed:
			online documentation|https://github.com/Planteome/plant-experimental-conditions-ontology

	'miriam_id' has been modified:
		Before: None
		After: 

	'dataProcesses' has been modified:
		Before:
			Browse Ontology (Planteome)
			Browse Ontoloty (OLS)
			Browse Ontology (Ontobee)
		After:
			Browse Ontology (Planteome)
			Browse Ontoloty (OLS)
			Browse Ontology (Ontobee)
			AgroPortal: Browse / Download
		Added:
			AgroPortal: Browse / Download
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.6yNXYK' by 'The FAIRsharing Team' at 13:33, 14 Feb 2019 (approved):

	'doi' has been modified:
		Before: None
		After: 

	'miriam_id' has been modified:
		Before: 
		After: None

Support

General

forum

GitHub Issue Tracker

Additional Information

Contact

Pankaj Jaiswal

External Links

Bioportal	http://bioportal.bioontology.org/ontologies/PECO
OBO	http://obofoundry.org/ontology/peco.html

Tools

No tools defined

Schemas

No XSD schemas defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Creative Commons Attribution 4.0 International (CC BY 4.0)

Data Access

Browse Ontology (Planteome)	http://browser.planteome.org/amigo/term/PECO:0007359
Browse Ontoloty (OLS)	https://www.ebi.ac.uk/ols/ontologies/peco
Browse Ontology (Ontobee)	http://www.ontobee.org/ontology/PECO
AgroPortal: Browse / Download	http://agroportal.lirmm.fr/ontologies/PECO

Publications

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.

Cooper L,Meier A,Laporte MA,Elser JL,Mungall C,Sinn BT,Cavaliere D,Carbon S,Dunn NA,Smith B,Qu B,Preece J,Zhang E,Todorovic S,Gkoutos G,Doonan JH,Stevenson DW,Arnaud E,Jaiswal P
Nucleic Acids Res 2017

View Paper (PubMed) View Publication

PECO Ontology Display

View in BioPortal.

Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases (2)

Planteome
A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.

DES-TOMATO
DES-TOMATO is a topic-specific literature exploration system developed to allow the exploration of information related to tomato. The information provided in DES-TOMATO is obtained through the text-mining of available scientific literature, namely full-length articles in PubMed Central and titles and abstracts in PubMed.

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by cooperl09

Maintains

Jaiswal Lab, Department of Botany and Plant Pathology (BPP), Oregon State University, Corvallis, United States (Lab) Lead

Plant Experimental Condition Ontology

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