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Pathogen Host Interactions

Abbreviation:PHI-base

General Information

PHI-Base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts.

Homepage http://www.phi-base.org/

Countries that developed this resource United Kingdom

Created in 2005

Taxonomic range

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PHI-base; Pathogen Host Interactions; DOI: https://doi.org/10.25504/FAIRsharing.73cqdk; Last edited: June 22, 2021, 11:56 a.m.; Last accessed: Jul 27 2021 3:32 p.m.

Publication for citation PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database. Urban M,Cuzick A,Rutherford K,Irvine A,Pedro H,Pant R,Sadanadan V,Khamari L,Billal S,Mohanty S,Hammond-Kosack KE; Nucleic Acids Res ; 2016; 10.1093/nar/gkw1089 ;

This record is maintained by MartinUrban

Record updated: June 11, 2021, 4:02 p.m. by The FAIRsharing Team.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.73cqdk' by 'The FAIRsharing Team' at 16:02, 11 Jun 2021 (approved):

	'licences' has been modified:
		Before:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			Phibase Data Policies and Disclaimer|http://www.phi-base.org/disclaimer.htm|Data
			PHI-base No commercial use without permission|http://www.phi-base.org/disclaimer.htm|Software
		After:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			Phibase Data Policies and Disclaimer|http://www.phi-base.org/disclaimer.htm|Data
		Added:
		Removed:
			PHI-base No commercial use without permission|http://www.phi-base.org/disclaimer.htm|Software

Edits to 'https://fairsharing.org/FAIRsharing.73cqdk' by 'The FAIRsharing Team' at 16:00, 11 Jun 2021 (approved):

	'licences' has been modified:
		Before:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			PHI-base Academic use|http://www.phi-base.org/disclaimer.htm|Data
			PHI-base No commercial use without permission|http://www.phi-base.org/disclaimer.htm|Software
			Phibase Data Policies and Disclaimer|http://www.phi-base.org/disclaimer.htm|Data
		After:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			Phibase Data Policies and Disclaimer|http://www.phi-base.org/disclaimer.htm|Data
			PHI-base No commercial use without permission|http://www.phi-base.org/disclaimer.htm|Software
		Added:
		Removed:
			PHI-base Academic use|http://www.phi-base.org/disclaimer.htm|Data

Edits to 'https://fairsharing.org/FAIRsharing.73cqdk' by 'The FAIRsharing Team' at 08:59, 20 Apr 2021 (approved):

	'licences' has been modified:
		Before:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			Academic use||Data
			No commercial use without permission||Data
			Phibase Data Policies and Disclaimer|http://www.phi-base.org/disclaimer.htm|Data
		After:
			Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0|http://opendatacommons.org/licenses/pddl/1.0/|Data
			PHI-base Academic use|http://www.phi-base.org/disclaimer.htm|Data
			PHI-base No commercial use without permission|http://www.phi-base.org/disclaimer.htm|Software
			Phibase Data Policies and Disclaimer|http://www.phi-base.org/disclaimer.htm|Data
		Added:
			PHI-base Academic use|http://www.phi-base.org/disclaimer.htm|Data
			PHI-base No commercial use without permission|http://www.phi-base.org/disclaimer.htm|Software
		Removed:
			Academic use||Data
			No commercial use without permission||Data

Edits to 'https://fairsharing.org/FAIRsharing.73cqdk' by 'The FAIRsharing Team' at 18:28, 14 Mar 2019 (approved):

	'supportLinks' has been modified:
		Before:
			email|rothamsted.phibase@rothamsted.ac.uk
			email|contact@phi-base.org
			help|http://www.phi-base.org/helpLink.htm
			online documentation|http://www.phi-base.org/releaseNote.htm
			online documentation|http://www.phi-base.org/aboutUs.htm
			online documentation|http://www.phi-base.org/consortium.htm
			twitter|@phi_base
		After:
			email|rothamsted.phibase@rothamsted.ac.uk
			email|contact@phi-base.org
			help|http://www.phi-base.org/helpLink.htm
			online documentation|http://www.phi-base.org/aboutUs.htm
			online documentation|http://www.phi-base.org/consortium.htm
			twitter|@phi_base
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			online documentation|http://www.phi-base.org/releaseNote.htm

	'tools' has been modified:
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			Blast||http://phi-blast.phi-base.org/
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			Blast||http://phi-blast.phi-base.org/

	'dataProcesses' has been modified:
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			Download
			Users contribition 
			search
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			Download
			Users contribition 
			search
			Blast
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			Blast
			Data release
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	'onto_domains' has been modified:
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			gene
			host role
			pathogen
			virulence
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			Biocuration
			disease
			disease phenotype
			gene
			gene-disease association
			host role
			literature curation
			microbe-host interaction phenotype
			mutation
			pathogen
			phenotype
			virulence
		Added:
			Biocuration
			disease
			disease phenotype
			gene-disease association
			literature curation
			microbe-host interaction phenotype
			mutation
			phenotype
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	'yearOfCreation' has been modified:
		Before: None
		After: 2005

Edits to 'https://fairsharing.org/FAIRsharing.73cqdk' by 'The FAIRsharing Team' at 12:45, 19 Dec 2018 (approved):

	'supportLinks' has been modified:
		Before:
			email|rothamsted.phibase@rothamsted.ac.uk
			email|contact@phi-base.org
			help|http://www.phi-base.org/helpLink.htm
		After:
			email|rothamsted.phibase@rothamsted.ac.uk
			email|contact@phi-base.org
			help|http://www.phi-base.org/helpLink.htm
			online documentation|http://www.phi-base.org/releaseNote.htm
			online documentation|http://www.phi-base.org/aboutUs.htm
			online documentation|http://www.phi-base.org/consortium.htm
			twitter|@phi_base
		Added:
			online documentation|http://www.phi-base.org/releaseNote.htm
			online documentation|http://www.phi-base.org/aboutUs.htm
			online documentation|http://www.phi-base.org/consortium.htm
			twitter|@phi_base
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	'miriam_id' has been modified:
		Before: None
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	'publications' has been modified:
		Before:
			PHI-base update: additions to the pathogen host interaction database.|Winnenburg R., Urban M., Beacham A., Baldwin TK., Holland S., Lindeberg M., Hansen H., Rawlings C., Hammond-Kosack KE., Khler J., |Nucleic Acids Res.|2008
			PHI-base: a new database for pathogen host interactions.|Winnenburg R., Baldwin TK., Urban M., Rawlings C., Khler J., Hammond-Kosack KE., |Nucleic Acids Res.|2006
			The Pathogen-Host Interactions database (PHI-base): additions and future developments.|Urban M,Pant R,Raghunath A,Irvine AG,Pedro H,Hammond-Kosack KE|Nucleic Acids Res|2014
		After:
			PHI-base update: additions to the pathogen host interaction database.|Winnenburg R., Urban M., Beacham A., Baldwin TK., Holland S., Lindeberg M., Hansen H., Rawlings C., Hammond-Kosack KE., Khler J., |Nucleic Acids Res.|2008
			PHI-base: a new database for pathogen host interactions.|Winnenburg R., Baldwin TK., Urban M., Rawlings C., Khler J., Hammond-Kosack KE., |Nucleic Acids Res.|2006
			The Pathogen-Host Interactions database (PHI-base): additions and future developments.|Urban M,Pant R,Raghunath A,Irvine AG,Pedro H,Hammond-Kosack KE|Nucleic Acids Res|2014
			PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database.|Urban M,Cuzick A,Rutherford K,Irvine A,Pedro H,Pant R,Sadanadan V,Khamari L,Billal S,Mohanty S,Hammond-Kosack KE|Nucleic Acids Res|2016
		Added:
			PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database.|Urban M,Cuzick A,Rutherford K,Irvine A,Pedro H,Pant R,Sadanadan V,Khamari L,Billal S,Mohanty S,Hammond-Kosack KE|Nucleic Acids Res|2016
		Removed:

Edits to 'https://fairsharing.org/FAIRsharing.73cqdk' by 'The FAIRsharing Team' at 10:10, 28 Sep 2016 (approved):

	'name' has been modified:
		Before: PHI-base: The Pathogen Host Interactions
		After: Pathogen Host Interactions

Edits to 'https://fairsharing.org/FAIRsharing.73cqdk' by 'The FAIRsharing Team' at 16:46, 27 Sep 2016 (approved):

	'contactName' has been modified:
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			Martin Urban
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In Collections

EOSC-Life

ELIXIR UK node resources

Support

General

support email	Contact Email
support email	Contact Email
help	PHI-base Help Pages
online documentation	About Phi-base
online documentation	PHI-base Community
twitter	@phi_base

Additional Information

Contact

Martin Urban ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Applies to: Data use

Data Release

Data release

http://www.phi-base.org/releaseNote.htm

Data Curation

Users contribition

http://www.phi-base.org/errorContribution.htm

Data Access

Download	http://www.phi-base.org/downloadLink.htm
search	http://www.phi-base.org/searchFacet.htm?queryTerm=
Blast	http://phi-blast.phi-base.org/

Publications

PHI-base update: additions to the pathogen host interaction database.

Winnenburg R., Urban M., Beacham A., Baldwin TK., Holland S., Lindeberg M., Hansen H., Rawlings C., Hammond-Kosack KE., Köhler J.,
Nucleic Acids Res. 2008

View Paper (PubMed) View Publication

PHI-base: a new database for pathogen host interactions.

Winnenburg R., Baldwin TK., Urban M., Rawlings C., Köhler J., Hammond-Kosack KE.,
Nucleic Acids Res. 2006

View Paper (PubMed) View Publication

The Pathogen-Host Interactions database (PHI-base): additions and future developments.

Urban M,Pant R,Raghunath A,Irvine AG,Pedro H,Hammond-Kosack KE
Nucleic Acids Res 2014

View Paper (PubMed) View Publication

PHI-base: a new interface and further additions for the multi-species pathogen-host interactions database.

Urban M,Cuzick A,Rutherford K,Irvine A,Pedro H,Pant R,Sadanadan V,Khamari L,Billal S,Mohanty S,Hammond-Kosack KE
Nucleic Acids Res 2016

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Gene Ontology

Models and Formats

No syntax standards defined

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Ensembl Genomes

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by MartinUrban

Funds

Biotechnology and Biological Sciences Research Council (BBSRC), UK (Government body)

Maintains

Rothamsted Research, UK (Research institute) Lead

Grant Number(s)

BB/1000488/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/I/001077/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/J/004383/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)
BB/K020056/1 (Biotechnology and Biological Sciences Research Council (BBSRC), UK)

Pathogen Host Interactions

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