standards > model/format > DOI:10.25504/FAIRsharing.77e3my

ready Molecular Interaction eXtensible Markup Language

Abbreviation: PSI-MI XML

General Information
The PSI-MI interchange format and accompanying controlled vocabularies was originally designed by a consortium of molecular interaction data providers from both academia and industry, including BIND, DIP, IntAct, MINT, MIPS, GlaxoSmithKline, CellZome, Hybrigenics, Universities of Bielefeld, Bordeaux, Cambridge, and others. It is maintained, and kept fit for purpose by the Molecular Interaction workgroup of the HUPO PSI. It can be used for storing any kind of molecular interaction data including complexes and binary interactions such as protein-protein interactions and nucleic acid interactions.


Countries that developed this resource European Union , United States

Created in 2003

Taxonomic range

In the following recommendations:

How to cite this record PSI-MI XML; Molecular Interaction eXtensible Markup Language; DOI:; Last edited: April 29, 2019, 11:42 a.m.; Last accessed: Mar 08 2021 9:46 a.m.

This record is maintained by orchard  and HUPO PSI  (HUPOPSI)

Record updated: April 29, 2019, 11:41 a.m. by The FAIRsharing Team.

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Additional Information


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Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.

Kerrien S,Orchard S,Montecchi-Palazzi L,Aranda B,Quinn AF,Vinod N,Bader GD,Xenarios I,Wojcik J,Sherman D,Tyers M,Salama JJ,Moore S,Ceol A,Chatr-Aryamontri A,Oesterheld M,Stumpflen V,Salwinski L,Nerothin J,Cerami E,Cusick ME,Vidal M,Gilson M,Armstrong J,Woollard P,Hogue C,Eisenberg D,Cesareni G,Apweiler R,Hermjakob H
BMC Biol 2007

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The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.

Hermjakob H,Montecchi-Palazzi L,Bader G,Wojcik J,Salwinski L,Ceol A,Moore S,Orchard S,Sarkans U,von Mering C,Roechert B,Poux S,Jung E,Mersch H,Kersey P,Lappe M,Li Y,Zeng R,Rana D,Nikolski M,Husi H,Brun C,Shanker K,Grant SG,Sander C,Bork P,Zhu W,Pandey A,Brazma A,Jacq B,Vidal M,Sherman D,Legrain P,Cesareni G,Xenarios I,Eisenberg D,Steipe B,Hogue C,Apweiler R
Nat Biotechnol 2004

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Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.

Sivade Dumousseau M,Alonso-Lopez D,Ammari M,Bradley G,Campbell NH,Ceol A,Cesareni G,Combe C,De Las Rivas J,Del-Toro N,Heimbach J,Hermjakob H,Jurisica I,Koch M,Licata L,Lovering RC,Lynn DJ,Meldal BHM,Micklem G,Panni S,Porras P,Ricard-Blum S,Roechert B,Salwinski L,Shrivastava A,Sullivan J,Thierry-Mieg N,Yehudi Y,Van Roey K,Orchard S
BMC Bioinformatics 2018

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