databases > DOI:10.25504/FAIRsharing.7hxxc4
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ready PhylomeDB

General Information
PhylomeDB is a public database for complete catalogs of gene phylogenies (phylomes). Researchers are able to use this resource to visualise the history of genes with the available phylogentic trees and multiple sequence alignments.

Homepage http://phylomedb.org

Countries that developed this resource Spain

Created in 2007

Taxonomic range





How to cite this record FAIRsharing.org: PhylomeDB; PhylomeDB; DOI: https://doi.org/10.25504/FAIRsharing.7hxxc4; Last edited: April 26, 2021, 9:30 a.m.; Last accessed: Jul 30 2021 6:43 p.m.


This record is maintained by LaiaCarrete  and jhcepas

Record updated: April 20, 2021, 2:39 p.m. by The FAIRsharing Team.

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Support

General

FAQ http://phylomedb.org/?q=faq
help http://phylomedb.org/?q=help
twitter @phylomedb

Additional Information

Contact Toni Gabaldon


Access / Retrieve Data

Conditions of Use


Data Access

Download ftp://phylomedb.org/phylomedb/



Publications

PhylomeDB: a database for genome-wide collections of gene phylogenies.

Huerta-Cepas J., Bueno A., Dopazo J., Gabaldón T.,
Nucleic Acids Res. 2008

View Paper (PubMed)

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.

Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T. - See more at: http://www.biosharing.org/biodbcore-000611#sthash.SMMBBe07.dpuf
Nucleic Acids Res. 2010

View Paper (PubMed)

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.

Huerta-Cepas J,Capella-Gutierrez S,Pryszcz LP,Marcet-Houben M,Gabaldon T
Nucleic Acids Res 2013

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

No semantic standards defined

Models and Formats

Identifier Schemas

No identifier schema standards defined

Metrics

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Related Databases

No related databases defined


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

Funds

Maintains

Grant Number(s)

  • BIO2012-37161 (Spanish Ministry of Economy and Competitiveness (MINECO))

  • ERC-2012-StG-310325 (The European Research Council (ERC))

  • FP/2007-2013/ERC (The European Research Council (ERC))

  • NPRP 5-298-3-086 (Qatar National Research Fund)