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Protein Interaction Network Analysis platform

Abbreviation:PINA

General Information

Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization, and management. It integrates protein-protein interaction (PPI) data from public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. In particular, it provides a variety of built-in tools to filter and analyze the networks for gaining biological and functional insights into the network.

Homepage http://omics.bjcancer.org/pina/

Countries that developed this resource Australia , China , Finland

Created in 2006

Taxonomic range

Caenorhabditis elegans

Drosophila melanogaster

Homo sapiens

Mus musculus

Rattus norvegicus

Saccharomyces cerevisiae

Knowledge Domains

Subjects

How to cite this record FAIRsharing.org: PINA; Protein Interaction Network Analysis platform; DOI: https://doi.org/10.25504/FAIRsharing.7q4gsz; Last edited: Nov. 9, 2020, 3:42 p.m.; Last accessed: Oct 24 2021 10:23 p.m.

This record is maintained by wujm@bjmu.edu.cn

Record updated: Nov. 5, 2020, 12:57 p.m. by wujm@bjmu.edu.cn.

Show edit history

Edits to 'https://fairsharing.org/FAIRsharing.7q4gsz' by 'wujm@bjmu.edu.cn' at 12:55, 05 Nov 2020 (approved):

	'user_defined_tags' has been modified:
		Before:
			Breast cancer
		After:
		Added:
		Removed:
			Breast cancer

Edits to 'https://fairsharing.org/FAIRsharing.7q4gsz' by 'wujm@bjmu.edu.cn' at 12:53, 05 Nov 2020 (approved):

	'organizations' has been modified:
		Before:
			Academy of Finland, Helsinki, Finland|http://www.aka.fi/en|Funds
			Avner Nahmani Pancreatic Cancer Foundation, Australia|http://avnersfoundation.org.au|Funds
			Cancer Council New South Wales, Sydney, Australia|http://www.cancercouncil.com.au|Funds
			National Health and Medical Research Council (NHMRC), Australia|https://www.nhmrc.gov.au/|Funds
		After:
			Academy of Finland, Helsinki, Finland|http://www.aka.fi/en|Funds
			Cancer Council New South Wales, Sydney, Australia|http://www.cancercouncil.com.au|Funds
			National Health and Medical Research Council (NHMRC), Australia|https://www.nhmrc.gov.au/|Funds
			PKU-Baidu Fund|http://www.research.pku.edu.cn/kyxm/xjkyxm/tzggxj/1324824.htm|Funds
			Beijing Municipal Bureau of Health|http://wjw.beijing.gov.cn/|Funds
			Beijing Municipal Science and Technology Commission|http://kw.beijing.gov.cn/|Funds
		Added:
			PKU-Baidu Fund|http://www.research.pku.edu.cn/kyxm/xjkyxm/tzggxj/1324824.htm|Funds
			Beijing Municipal Bureau of Health|http://wjw.beijing.gov.cn/|Funds
			Beijing Municipal Science and Technology Commission|http://kw.beijing.gov.cn/|Funds
		Removed:
			Avner Nahmani Pancreatic Cancer Foundation, Australia|http://avnersfoundation.org.au|Funds

	'supportLinks' has been modified:
		Before:
			FAQ|http://omics.bjcancer.org/pina/interactome.faq.do
			training|http://omics.bjcancer.org/pina/interactome.tutorial.do
		After:
			online documentation|https://omics.bjcancer.org/pina/tutorial.action
		Added:
			online documentation|https://omics.bjcancer.org/pina/tutorial.action
		Removed:
			FAQ|http://omics.bjcancer.org/pina/interactome.faq.do
			training|http://omics.bjcancer.org/pina/interactome.tutorial.do

	'description' has been modified:
		Before: The Protein Interaction Network Analysis (PINA)- is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.
		After: Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization, and management. It integrates protein-protein interaction (PPI) data from public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms. In particular, it provides a variety of built-in tools to filter and analyze the networks for gaining biological and functional insights into the network.


	'countries' has been modified:
		Before:
			Australia
			Finland
		After:
			Australia
			China
			Finland
		Added:
			China
		Removed:

	'user_defined_tags' has been modified:
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		After:
			Breast cancer
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			Breast cancer
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	'onto_disciplines' has been modified:
		Before:
			Life Science
		After:
			Data Visualization
			Life Science
		Added:
			Data Visualization
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	'name' has been modified:
		Before: Protein Interaction Network Analysis
		After: Protein Interaction Network Analysis platform

	'contactEmail' has been modified:
		Before: j.wu@garvan.org.au
		After: wujm@bjmu.edu.cn

	'grants' has been modified:
		Before:
			125826
			631701
			ICGC 09-01
			SRP11-01
		After:
			125826
			2019-1
			2019BD012
			631701
			ICGC 09-01
			SRP11-01
			Z201100008320006
		Added:
			2019-1
			2019BD012
			Z201100008320006
		Removed:

	'publications' has been modified:
		Before:
			Integrated network analysis platform for protein-protein interactions.|Wu J., Vallenius T., Ovaska K., Westermarck J., Mkel TP., Hautaniemi S., |Nat. Methods|2009
			PINA v2.0: mining interactome modules.|Cowley MJ,Pinese M,Kassahn KS,Waddell N,Pearson JV,Grimmond SM,Biankin AV,Hautaniemi S,Wu J|Nucleic Acids Res|2011
		After:
			Integrated network analysis platform for protein-protein interactions.|Wu J., Vallenius T., Ovaska K., Westermarck J., Mkel TP., Hautaniemi S., |Nature Methods|2009
			PINA v2.0: mining interactome modules.|Cowley MJ,Pinese M,Kassahn KS,Waddell N,Pearson JV,Grimmond SM,Biankin AV,Hautaniemi S,Wu J|Nucleic Acids Research|2011
		Added:
			Integrated network analysis platform for protein-protein interactions.|Wu J., Vallenius T., Ovaska K., Westermarck J., Mkel TP., Hautaniemi S., |Nature Methods|2009
			PINA v2.0: mining interactome modules.|Cowley MJ,Pinese M,Kassahn KS,Waddell N,Pearson JV,Grimmond SM,Biankin AV,Hautaniemi S,Wu J|Nucleic Acids Research|2011
		Removed:
			Integrated network analysis platform for protein-protein interactions.|Wu J., Vallenius T., Ovaska K., Westermarck J., Mkel TP., Hautaniemi S., |Nat. Methods|2009
			PINA v2.0: mining interactome modules.|Cowley MJ,Pinese M,Kassahn KS,Waddell N,Pearson JV,Grimmond SM,Biankin AV,Hautaniemi S,Wu J|Nucleic Acids Res|2011

	'contactORCID' has been modified:
		Before: 
		After: 0000-0002-8876-128X

Edits to 'https://fairsharing.org/FAIRsharing.7q4gsz' by 'The FAIRsharing Team' at 20:38, 11 Jan 2018 (approved):

	'homepage' has been modified:
		Before: http://cbg.garvan.unsw.edu.au/pina/
		After: http://omics.bjcancer.org/pina/

Edits to 'https://fairsharing.org/FAIRsharing.7q4gsz' by 'The FAIRsharing Team' at 14:03, 08 Sep 2016 (approved):

	'name' has been modified:
		Before: PINA v2.0: Mining Interactome modules
		After: Protein Interaction Network Analysis

Edits to 'https://fairsharing.org/FAIRsharing.7q4gsz' by 'The FAIRsharing Team' at 11:34, 06 Sep 2016 (approved):

	'contactName' has been modified:
		Before:
			
		After:
			Jianmin Wu
		Added:
		Removed:

Support

General

online documentation

Tutorial

Additional Information

Contact

Jianmin Wu ORCID

Tools

No tools defined

Access / Retrieve Data

Conditions of Use

Data Versioning

versioning by date	No link recorded
access to historical files available	No link recorded

Data Release

quarterly release

No link recorded

Data Curation

manual curation of protein-protein interaction	No link recorded
computational prediction of interactome modules	No link recorded

Data Access

file download(XML,tab-delimited)	No link recorded
web service	No link recorded
web interface	No link recorded

Publications

Integrated network analysis platform for protein-protein interactions.

Wu J., Vallenius T., Ovaska K., Westermarck J., Mäkelä TP., Hautaniemi S.,
Nature Methods 2009

View Paper (PubMed)

PINA v2.0: mining interactome modules.

Cowley MJ,Pinese M,Kassahn KS,Waddell N,Pearson JV,Grimmond SM,Biankin AV,Hautaniemi S,Wu J
Nucleic Acids Research 2011

View Paper (PubMed) View Publication

Related Standards

Reporting Guidelines

No guidelines defined

Terminology Artifacts

Models and Formats

Molecular Interaction Tabular

Identifier Schemas

No identifier schema standards defined

Metrics

No metrics standards defined

Related Databases

Implementing Policies

This record is not implemented by any policy.

Credit

Record Maintainer

This record is maintained by wujm@bjmu.edu.cn

Funds

Academy of Finland, Helsinki, Finland (Research institute)
Cancer Council New South Wales, Sydney, Australia (Government body)
National Health and Medical Research Council (NHMRC), Australia (Government body)
PKU-Baidu Fund
Beijing Municipal Bureau of Health
Beijing Municipal Science and Technology Commission

Grant Number(s)

125826 (Academy of Finland, Helsinki, Finland)
2019-1 (Beijing Municipal Bureau of Health)
2019BD012 (PKU-Baidu Fund)
631701 (National Health and Medical Research Council (NHMRC), Australia)
ICGC 09-01 (Cancer Council New South Wales, Sydney, Australia)
SRP11-01 (Cancer Council New South Wales, Sydney, Australia)
Z201100008320006 (Beijing Municipal Science and Technology Commission)

Protein Interaction Network Analysis platform

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