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Gene Product Information Format
Abbreviation: GPI
General Information
The need for a way to represent genes/gene products separately from annotations, as well as the need to use the evidence ontology has lead to the creation of the GPAD (Gene Product Annotation Data) and GPI (Gene Product Information) formats, defined here. Whilst GPAD and GPI have been defined for use within the Gene Ontology Consortium for GO annotation, this specification is designed to be reusable for analagous ontology-based annotation - for example, gene phenotype annotation. GPI and GPAD documents consist of sequences of Unicode characters and are encoded in UTF-8 [RFC 3629].
How to cite this record
FAIRsharing.org: GPI; Gene Product Information Format; DOI: https://doi.org/10.25504/FAIRsharing.820ebm;
Last edited: July 16, 2019, 3:57 p.m.; Last accessed: Jun 06 2020 2:38 a.m.
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Edits to 'https://fairsharing.org/FAIRsharing.820ebm' by 'The FAIRsharing Team' at 21:02, 22 May 2019 (approved):
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Before: GPAD and GPI document structures are defined using a standard BNF notation, which is summarized below. terminal symbols are single quoted non-terminal symbols are unquoted zero or more symbols are indicated by following the symbol with a star; e.g. Annotation* zero or one symbols are written using square brackets; e.g. [Qualifier] alternative symbols are written using vertical bars groupings are written using parentheses complementation is writte using minus symbol GPI and GPAD documents consist of sequences of Unicode characters and are encoded in UTF-8 [RFC 3629].
After: The need for a way to represent genes/gene products separately from annotations, as well as the need to use the evidence ontology has lead to the creation of the GPAD (Gene Product Annotation Data) and GPI (Gene Product Information) formats, defined here. Whilst GPAD and GPI have been defined for use within the Gene Ontology Consortium for GO annotation, this specification is designed to be reusable for analagous ontology-based annotation - for example, gene phenotype annotation. GPI and GPAD documents consist of sequences of Unicode characters and are encoded in UTF-8 [RFC 3629].
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Related Databases (1)
Complex Portal
The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms. The majority of complexes are made up of proteins but may also include nucleic acids or small molecules. All data is freely available for search and download.
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This record is not implemented by any policy.
