Gene Product Information Format
Countries that developed this resource United States
How to cite this record FAIRsharing.org: GPI; Gene Product Information Format; DOI: https://doi.org/10.25504/FAIRsharing.820ebm; Last edited: March 12, 2021, 3:41 p.m.; Last accessed: Oct 22 2021 5:49 p.m.
Record updated: Feb. 23, 2021, 12:06 p.m. by The FAIRsharing Team.
Edits to 'https://fairsharing.org/FAIRsharing.820ebm' by 'The FAIRsharing Team' at 12:06, 23 Feb 2021 (approved): 'homepage' has been modified: Before: ftp://ftp.geneontology.org/go/www/specifications/gpad/gpad-1.html#gpi-syntax After: http://geneontology.org/docs/gene-product-information-gpi-format/ 'dataProcesses' has been modified: Before: After: Download, data access, ftp://ftp.geneontology.org/go/www/specifications/gpad/gpad-1.html#gpi-syntax Added: Download, data access, ftp://ftp.geneontology.org/go/www/specifications/gpad/gpad-1.html#gpi-syntax Removed:
Edits to 'https://fairsharing.org/FAIRsharing.820ebm' by 'The FAIRsharing Team' at 21:02, 22 May 2019 (approved): 'miriam_id' has been modified: Before: None After: 'countries' has been modified: Before: After: United States Added: United States Removed:
Edits to 'https://fairsharing.org/FAIRsharing.820ebm' by 'The FAIRsharing Team' at 11:57, 21 Nov 2018 (approved): 'domains' has been modified: Before: Gene Genome Life Science Protein After: Gene Genome Life Science Protein Transcript Added: Transcript Removed:
Edits to 'https://fairsharing.org/FAIRsharing.820ebm' by 'The FAIRsharing Team' at 22:28, 23 Nov 2016 (approved): 'description' has been modified: Before: GPAD and GPI document structures are defined using a standard BNF notation, which is summarized below. terminal symbols are single quoted non-terminal symbols are unquoted zero or more symbols are indicated by following the symbol with a star; e.g. Annotation* zero or one symbols are written using square brackets; e.g. [Qualifier] alternative symbols are written using vertical bars groupings are written using parentheses complementation is writte using minus symbol GPI and GPAD documents consist of sequences of Unicode characters and are encoded in UTF-8 [RFC 3629]. After: The need for a way to represent genes/gene products separately from annotations, as well as the need to use the evidence ontology has lead to the creation of the GPAD (Gene Product Annotation Data) and GPI (Gene Product Information) formats, defined here. Whilst GPAD and GPI have been defined for use within the Gene Ontology Consortium for GO annotation, this specification is designed to be reusable for analagous ontology-based annotation - for example, gene phenotype annotation. GPI and GPAD documents consist of sequences of Unicode characters and are encoded in UTF-8 [RFC 3629].
|Contact||Gene Ontology Consortium|
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The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms. The majority of complexes are made up of proteins but may also include nucleic acids or small molecules. All data is freely available for search and download.
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National Human Genome Research Institute (NHGRI), Bethesda, MD, USA (Government body)
Genetic Ontology Consortium (Consortium)